Gene: AGPAT4

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
1-acylglycerol-3-phosphate O-acyltransferase 4
Ensembl
ENSG00000026652.15
Summary
This gene encodes a member of the 1-acylglycerol-3-phosphate O-acyltransferase family. This integral membrane protein converts lysophosphatidic acid to phosphatidic acid, the second step in de novo phospholipid biosynthesis. [provided by RefSeq, Jul 2008]

Protein product

Phosphosites on the primary protein product

Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA-9.1e-40--1.5e-8--0.11-2.5e-28-5.2e-33--0.014-
protein-1.9e-7--5.3e-3--1.8e-4-3e-8-2.6e-13-0.11-0.710.94

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC345678910111213log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCGBMHNSCCLSCCLUADOVPDACUCEC171819202122232425log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0123456789101112130-1-2-3-4-5-6-7-8-9-10-11-12-13Pan-cancer0510152025300-5-10-15-20-25-30proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of AGPAT4 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION3.9e-107.5e-30.24--4.4e-52.3e-51.8e-84.7e-42.8e-30.080.37
PROGENy: TGFb1.9e-80.0290.69--0.140.0231.7e-115.8e-40.0110.770.63
HALLMARK_ANGIOGENESIS5.6e-88.7e-3-0.84--4.8e-52.7e-61.2e-52.0e-40.0340.340.038
HALLMARK_HYPOXIA1.9e-74.0e-4-0.8--1.5e-41.1e-32.8e-47.8e-50.0550.330.018
KINASE-PSP_PKCA/PRKCA5.9e-7-0.74--0.912.9e-36.6e-50.570.0750.0060.023
DISEASE-PSP_Alzheimer's_disease5.6e-6---1.3e-8-----0.46
HALLMARK_TGF_BETA_SIGNALING1.5e-50.160.28--0.0250.0265.0e-51.1e-30.013-0.980.45
PROGENy: TNFa2.7e-52.8e-30.83--8.4e-45.6e-43.7e-31.1e-30.130.450.42
HALLMARK_KRAS_SIGNALING_UP5.7e-50.0510.19--0.0353.1e-33.8e-51.7e-30.17-0.95-0.56
HALLMARK_COAGULATION6.9e-50.170.44--4.0e-45.9e-43.2e-54.3e-30.0780.1-0.61
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of AGPAT4

BRCA0.490.000.06proteinmRNASCNVmethylationCCRCC0.360.280.39proteinmRNASCNVmethylationCOAD0.07proteinmRNASCNVmethylationGBM0.780.430.57proteinmRNASCNVmethylationHNSCC0.620.190.17proteinmRNASCNVmethylationLSCC0.74-0.020.20proteinmRNASCNVmethylationLUAD0.500.040.28proteinmRNASCNVmethylationOV0.460.210.46proteinmRNASCNVmethylationPDAC0.390.010.23proteinmRNASCNVmethylationUCEC0.600.100.22proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of AGPAT4 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.