Gene: AMPD3

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
adenosine monophosphate deaminase 3
Ensembl
ENSG00000133805.15
Summary
This gene encodes a member of the AMP deaminase gene family. The encoded protein is a highly regulated enzyme that catalyzes the hydrolytic deamination of adenosine monophosphate to inosine monophosphate, a branch point in the adenylate catabolic pathway. This gene encodes the erythrocyte (E) isoforms, whereas other family members encode isoforms that predominate in muscle (M) and liver (L) cells. Mutations in this gene lead to the clinically asymptomatic, autosomal recessive condition erythrocyte AMP deaminase deficiency. Alternatively spliced transcript variants encoding different isoforms of this gene have been described. [provided by RefSeq, Jul 2008]
Annotation
Druggable target (Tier T4)

Protein product

Phosphosites on the primary protein product

Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA1e-44-3e-11--2e-86.2e-138.9e-25-0.1-
protein5.5e-42-5.9e-242.3e-9-2.6e-159.4e-60.011-7.7e-35.7e-109.2e-5

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC5678910111213log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC2323.52424.52525.52626.5log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0246810121416182022242628300-2-4-6-8-10-12-14-16-18-20-22-24-26-28-30Pan-cancer01020304050607080901001101200-10-20-30-40-50-60-70-80-90-100-110-120proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of AMPD3 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_INFLAMMATORY_RESPONSE2.4e-1212.2e-167.8e-102.2e-162.2e-162.2e-162.2e-168.9e-61.7e-92.2e-162.2e-16
HALLMARK_IL6_JAK_STAT3_SIGNALING4.3e-1152.2e-162.6e-95e-92.2e-162.2e-162.2e-167.4e-71e-92.2e-162.2e-16
ESTIMATE: ImmuneScore2.5e-1032.2e-168.3e-76.7e-72.2e-162.2e-162.2e-161.4e-52.2e-161.9e-62.2e-16
HALLMARK_ALLOGRAFT_REJECTION1e-992.2e-163e-72.7e-72.2e-162.2e-162.2e-167.4e-62.2e-163.9e-77.3e-10
HALLMARK_COMPLEMENT8e-991e-102.2e-164.1e-92.2e-161.5e-112.2e-164.2e-42.2e-81.4e-82.2e-16
PROGENy: NFkB1.1e-902.2e-164.7e-57.7e-92.2e-169.6e-62.2e-161.1e-42.9e-62.2e-162.2e-16
PROGENy: TNFa8.5e-848e-111.3e-51.3e-82.2e-163.8e-42.2e-162.3e-42.4e-62.2e-162.2e-16
xcell: immune score2.2e-822.4e-91.5e-71.4e-52.2e-162.2e-162.2e-165.7e-55.3e-102.3e-61.7e-8
ESTIMATE: ESTIMATEScore1.3e-753.5e-62.5e-56.4e-72.2e-162.2e-162.2e-161.5e-48.8e-106.1e-56.3e-9
HALLMARK_IL2_STAT5_SIGNALING1.4e-732.4e-99.5e-55.6e-82.2e-161e-82.2e-164.4e-43.8e-94.6e-62.8e-9
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* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of AMPD3

BRCA0.61-0.03-0.06proteinmRNASCNVmethylationCCRCC0.74-0.29-0.28-0.33-0.100.16proteinmRNASCNVmethylationCOAD0.48-0.010.19proteinmRNASCNVmethylationGBM0.91-0.140.02-0.160.030.10proteinmRNASCNVmethylationHNSCC0.670.060.320.010.54-0.00proteinmRNASCNVmethylationLSCC0.75-0.090.15-0.130.35-0.04proteinmRNASCNVmethylationLUAD0.47-0.16-0.13-0.260.19-0.05proteinmRNASCNVmethylationOV0.680.10-0.07proteinmRNASCNVmethylationPDAC0.60-0.120.14-0.030.170.07proteinmRNASCNVmethylationUCEC0.75-0.01-0.02-0.07-0.030.01proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of AMPD3 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.