Basic information

Full name
ataxin 7
Ensembl
ENSG00000163635.19
Summary
The autosomal dominant cerebellar ataxias (ADCA) are a heterogeneous group of neurodegenerative disorders characterized by progressive degeneration of the cerebellum, brain stem and spinal cord. Clinically, ADCA has been divided into three groups: ADCA types I-III. ADCAI is genetically heterogeneous, with five genetic loci, designated spinocerebellar ataxia (SCA) 1, 2, 3, 4 and 6, being assigned to five different chromosomes. ADCAII, which always presents with retinal degeneration (SCA7), and ADCAIII often referred to as the 'pure' cerebellar syndrome (SCA5), are most likely homogeneous disorders. Several SCA genes have been cloned and shown to contain CAG repeats in their coding regions. ADCA is caused by the expansion of the CAG repeats, producing an elongated polyglutamine tract in the corresponding protein. The expanded repeats are variable in size and unstable, usually increasing in size when transmitted to successive generations. This locus has been mapped to chromosome 3, and it has been determined that the diseased allele associated with spinocerebellar ataxia-7 contains 37-306 CAG repeats (near the N-terminus), compared to 4-35 in the normal allele. The encoded protein is a component of the SPT3/TAF9/GCN5 acetyltransferase (STAGA) and TBP-free TAF-containing (TFTC) chromatin remodeling complexes, and it thus plays a role in transcriptional regulation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]

Protein product

Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA-8.2e-66--1.5e-16---3.4e-8-5.5e-30-1.2e-14--5.3e-8-
protein1.4e-10-0.025---0.794.3e-113.8e-11--0.0224.8e-3

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC7.588.599.51010.51111.51212.5log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCGBMHNSCCLSCCLUADOVPDACUCEC15161718192021222324log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0246810121416180-2-4-6-8-10-12-14-16-18Pan-cancer0510152025303540450-5-10-15-20-25-30-35-40-45proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of ATXN7 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_INTERFERON_ALPHA_RESPONSE3.3e-7-0.45-0.93-0.120.0175.2e-50.004-5.6e-30.096
HALLMARK_INTERFERON_GAMMA_RESPONSE1.9e-6-0.360.98-0.0260.065.0e-40.02-8.7e-30.068
PROGENy: JAK-STAT1.5e-5-0.55-0.77-0.210.0374.4e-50.017-0.0150.38
KINASE-PSP_Chk1/CHEK11.7e-5---0.17-0.870.0690.023-2.4e-30.028
xcell: T cell CD4+ Th21.3e-4-0.30.64-0.120.120.011-0.98-3.1e-40.033
cibersort: Macrophage M13.5e-4-0.93-0.44-0.290.0424.4e-30.003--0.960.033
xcell: Myeloid dendritic cell activated5.8e-40.49-0.92-0.450.260.122.7e-4--0.990.037
xcell: T cell CD8+6.5e-40.0410.67-0.260.86.4e-30.13--0.480.024
xcell: Macrophage M17.0e-4-0.140.041-0.710.0850.0670.065-0.190.055
KINASE-PSP_AurB/AURKB0.001---0.890.0720.340.001-0.950.074
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of ATXN7

BRCA0.230.260.30proteinmRNASCNVmethylationCCRCC0.28-0.100.28-0.330.69-0.34proteinmRNASCNVmethylationCOAD0.20proteinmRNASCNVmethylationGBM0.360.02-0.03-0.060.240.16proteinmRNASCNVmethylationHNSCC0.10-0.060.11-0.060.72-0.23proteinmRNASCNVmethylationLSCC0.270.020.03-0.110.59-0.23proteinmRNASCNVmethylationLUAD0.490.060.42-0.020.71-0.18proteinmRNASCNVmethylationOV-0.03proteinmRNASCNVmethylationPDAC0.170.26-0.190.200.460.18proteinmRNASCNVmethylationUCEC0.22-0.010.36-0.130.43-0.05proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of ATXN7 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.