Basic information

Full name
cellular communication network factor 4
Ensembl
ENSG00000104415.14
Summary
This gene encodes a member of the WNT1 inducible signaling pathway (WISP) protein subfamily, which belongs to the connective tissue growth factor (CTGF) family. WNT1 is a member of a family of cysteine-rich, glycosylated signaling proteins that mediate diverse developmental processes. The CTGF family members are characterized by four conserved cysteine-rich domains: insulin-like growth factor-binding domain, von Willebrand factor type C module, thrombospondin domain and C-terminal cystine knot-like domain. This gene may be downstream in the WNT1 signaling pathway that is relevant to malignant transformation. It is expressed at a high level in fibroblast cells, and overexpressed in colon tumors. The encoded protein binds to decorin and biglycan, two members of a family of small leucine-rich proteoglycans present in the extracellular matrix of connective tissue, and possibly prevents the inhibitory activity of decorin and biglycan in tumor cell proliferation. It also attenuates p53-mediated apoptosis in response to DNA damage through activation of the Akt kinase. It is 83% identical to the mouse protein at the amino acid level. Multiple alternatively spliced transcript variants have been identified. [provided by RefSeq, Mar 2011]

Protein product

  • ENST00000250160.11 Primary ENSP00000250160.5 (0 phosphosite)
  • ENST00000220856.6
  • ENST00000517423.5
  • ENST00000519433.1
Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA1.2e-32--4.1e-4--1.4e-124.5e-241.6e-24-6.6e-3-
protein3.8e-17-----1.3e-125.2e-5-5.9e-4-

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC34567891011121314log2(RSEM+1)tumornormal
Protein expression
BRCAGBMHNSCCLSCCLUADOVPDACUCEC13141516171819202122log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0510152025300-5-10-15-20-25-30Pan-cancer0204060801001201401600-20-40-60-80-100-120-140-160proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of CCN4 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
ESTIMATE: StromalScore1.9e-113e-7--0.01-5.4e-34.8e-30.590.0310.076
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION2.1e-103.2e-7--1.7e-3-0.0116.7e-30.250.50.15
ESTIMATE: ESTIMATEScore6.8e-80.022--0.02-0.0153.4e-30.650.0360.082
HALLMARK_ANGIOGENESIS9.6e-82.3e-5--3.8e-4-0.0310.0440.60.20.71
HALLMARK_HYPOXIA1.1e-64.3e-3--0.017-0.130.190.120.220.04
HALLMARK_KRAS_SIGNALING_UP1.4e-61.1e-3--0.02-0.0340.0440.720.0610.42
HALLMARK_APICAL_JUNCTION1.5e-65.3e-4--0.052-0.0280.610.370.0310.11
HALLMARK_INFLAMMATORY_RESPONSE4.1e-60.31--0.022-0.0273.9e-30.590.130.082
PROGENy: TGFb6.0e-62.5e-6--0.079-0.0190.150.560.370.8
HALLMARK_TGF_BETA_SIGNALING6.6e-66.8e-5--8.8e-3-0.0580.460.270.240.67
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of CCN4

BRCA0.52-0.19-0.26proteinmRNASCNVmethylationCCRCC-0.07proteinmRNASCNVmethylationCOAD-0.09proteinmRNASCNVmethylationGBM0.490.440.09proteinmRNASCNVmethylationHNSCC0.14proteinmRNASCNVmethylationLSCC0.66-0.05-0.08proteinmRNASCNVmethylationLUAD0.680.040.09proteinmRNASCNVmethylationOV0.230.04-0.01proteinmRNASCNVmethylationPDAC0.24-0.230.07proteinmRNASCNVmethylationUCEC0.69-0.37-0.06proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of CCN4 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.