Basic information

Full name
coagulation factor XIII B chain
Ensembl
ENSG00000143278.5
Summary
This gene encodes coagulation factor XIII B subunit. Coagulation factor XIII is the last zymogen to become activated in the blood coagulation cascade. Plasma factor XIII is a heterotetramer composed of 2 A subunits and 2 B subunits. The A subunits have catalytic function, and the B subunits do not have enzymatic activity and may serve as a plasma carrier molecules. Platelet factor XIII is comprised only of 2 A subunits, which are identical to those of plasma origin. Upon activation by the cleavage of the activation peptide by thrombin and in the presence of calcium ion, the plasma factor XIII dissociates its B subunits and yields the same active enzyme, factor XIIIa, as platelet factor XIII. This enzyme acts as a transglutaminase to catalyze the formation of gamma-glutamyl-epsilon-lysine crosslinking between fibrin molecules, thus stabilizing the fibrin clot. Factor XIII deficiency is classified into two categories: type I deficiency, characterized by the lack of both the A and B subunits; and type II deficiency, characterized by the lack of the A subunit alone. These defects can result in a lifelong bleeding tendency, defective wound healing, and habitual abortion. [provided by RefSeq, Jul 2008]

Protein product

Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA2.8e-22-1.8e-4--5.7e-64.2e-71.2e-9---
protein-1.2e-65--1-1.7e-17--2e-16-4.2e-31-7.7e-31-1.7e-91.4e-3-1.3e-8

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0.511.522.533.544.555.56log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC20.52121.52222.52323.52424.52525.52626.527log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC02468101214160-2-4-6-8-10-12-14-16Pan-cancer051015202530350-5-10-15-20-25-30-35proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of F13B with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_HYPOXIA7.3e-374.5e-60.0210.0334.9e-102.1e-32.2e-65.4e-71.8e-51.2e-36.7e-6
HALLMARK_TNFA_SIGNALING_VIA_NFKB1.4e-343.6e-30.0855.5e-32.2e-167.6e-51.3e-65.1e-73.4e-50.113.1e-4
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION6e-292.2e-54.3e-40.112e-80.0295.2e-57.3e-43.9e-63.1e-40.012
HALLMARK_MYOGENESIS4.4e-271.6e-41.1e-30.531.4e-50.0012.7e-85.2e-31.2e-42.9e-60.06
HALLMARK_KRAS_SIGNALING_UP7.5e-272.7e-62.4e-30.592.2e-163.3e-31.6e-51.4e-42.0e-40.730.021
xcell: Endothelial cell1.3e-263.6e-70.0180.535.2e-31.9e-42.4e-91.5e-70.0340.0139.2e-4
HALLMARK_UV_RESPONSE_DN9.3e-252.6e-73.2e-40.81.7e-30.275.6e-63.3e-42.2e-90.0020.043
ESTIMATE: StromalScore5e-225.3e-65.1e-30.357.1e-90.0358.6e-50.029.1e-41.1e-30.14
HALLMARK_APICAL_JUNCTION1.4e-212.7e-61.3e-30.841.7e-53.4e-33.4e-50.391.6e-52.8e-40.061
HALLMARK_ANGIOGENESIS2.4e-213.2e-75.8e-30.115.6e-80.021.2e-68.4e-43.8e-5-0.160.061
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of F13B

BRCA-0.04-0.150.16proteinmRNASCNVmethylationCCRCC-0.11-0.160.02proteinmRNASCNVmethylationCOAD0.120.080.04proteinmRNASCNVmethylationGBM-0.020.090.19proteinmRNASCNVmethylationHNSCC-0.11-0.040.19proteinmRNASCNVmethylationLSCC-0.01-0.060.13proteinmRNASCNVmethylationLUAD0.05-0.090.14proteinmRNASCNVmethylationOV0.14-0.08-0.02proteinmRNASCNVmethylationPDAC-0.09-0.06-0.20proteinmRNASCNVmethylationUCEC0.01-0.320.23proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of F13B and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.