Gene: FAM20C

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
FAM20C golgi associated secretory pathway kinase
Ensembl
ENSG00000177706.9
Summary
This gene encodes a member of the family of secreted protein kinases. The encoded protein binds calcium and phosphorylates proteins involved in bone mineralization. Mutations in this gene are associated with the autosomal recessive disorder Raine syndrome. [provided by RefSeq, Apr 2014]
Annotation
Protein Kinase

Protein product

Phosphosites on the primary protein product

Tumor and normal comparison

Loading, please wait
Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA7.7e-3--1.3e-15--9e-72.1e-31.5e-12--0.26-
protein-4.1e-14--1.1e-3---0.014-5.2e-3-1.7e-12--7.8e-3-0.78

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC67891011121314log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCGBMHNSCCLSCCLUADOVPDACUCEC1516171819202122232425log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC02468101214161820220-2-4-6-8-10-12-14-16-18-20-22Pan-cancer0510152025303540455055600-5-10-15-20-25-30-35-40-45-50-55-60proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of FAM20C with phenotypes and mutations

Loading, please wait
Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_HYPOXIA8.7e-281.1e-32.6e-4-2.2e-161.1e-32.0e-48.5e-49.8e-35.2e-30.052
PROGENy: TNFa1.7e-188.3e-34.6e-3-7.2e-100.260.13.3e-30.258.6e-67.1e-4
HALLMARK_TNFA_SIGNALING_VIA_NFKB1.8e-180.0020.084-1.4e-100.220.0120.0070.0395.0e-60.044
HALLMARK_ANGIOGENESIS2.4e-162.1e-33.9e-3-5.3e-97.6e-34.2e-52.5e-30.20.610.23
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION2.4e-162.8e-56.4e-3-2.9e-90.0165.7e-50.0480.120.490.28
HALLMARK_INFLAMMATORY_RESPONSE9.9e-160.0790.011-7.5e-90.0540.0650.0210.192.5e-50.017
PROGENy: NFkB1.1e-150.030.018-1.5e-80.290.298.2e-30.232.0e-61.8e-3
cibersort: Neutrophil1.6e-140.89.1e-6-3.4e-30.140.0396.7e-40.0564.5e-60.046
HALLMARK_COAGULATION2.3e-141.8e-34.3e-5-3.6e-94.2e-31.2e-30.380.18-0.710.065
xcell: Monocyte3.4e-140.560.001-3.7e-100.0176.8e-30.180.316.3e-40.082
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of FAM20C

BRCA0.560.240.29proteinmRNASCNVmethylationCCRCC0.36-0.040.11-0.040.26-0.09proteinmRNASCNVmethylationCOAD0.05proteinmRNASCNVmethylationGBM0.700.09-0.030.100.140.19proteinmRNASCNVmethylationHNSCC0.56-0.040.36-0.040.24-0.12proteinmRNASCNVmethylationLSCC0.43-0.190.160.010.16-0.11proteinmRNASCNVmethylationLUAD0.35-0.01-0.03-0.200.100.13proteinmRNASCNVmethylationOV0.080.110.42proteinmRNASCNVmethylationPDAC0.10-0.00-0.23-0.06-0.06-0.05proteinmRNASCNVmethylationUCEC0.770.110.26-0.040.100.04proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of FAM20C and the protein abundance of other genes

Loading, please wait
Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.