Basic information

Full name
flavin containing dimethylaniline monoxygenase 3
Ensembl
ENSG00000007933.13
Summary
Flavin-containing monooxygenases (FMO) are an important class of drug-metabolizing enzymes that catalyze the NADPH-dependent oxygenation of various nitrogen-,sulfur-, and phosphorous-containing xenobiotics such as therapeutic drugs, dietary compounds, pesticides, and other foreign compounds. The human FMO gene family is composed of 5 genes and multiple pseudogenes. FMO members have distinct developmental- and tissue-specific expression patterns. The expression of this FMO3 gene, the major FMO expressed in adult liver, can vary up to 20-fold between individuals. This inter-individual variation in FMO3 expression levels is likely to have significant effects on the rate at which xenobiotics are metabolised and, therefore, is of considerable interest to the pharmaceutical industry. This transmembrane protein localizes to the endoplasmic reticulum of many tissues. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms. Mutations in this gene cause the disorder trimethylaminuria (TMAu) which is characterized by the accumulation and excretion of unmetabolized trimethylamine and a distinctive body odor. In healthy individuals, trimethylamine is primarily converted to the non odorous trimethylamine N-oxide.[provided by RefSeq, Jan 2016]

Protein product

Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA-7.7e-29--0.014---2.9e-7-1.3e-12-1.8e-21--0.48-
protein-5.6e-17--0.66---9.4e-5-2.9e-4-2.2e-8-3.6e-7-0.062-

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC123456789101112131415log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC1415161718192021222324252627log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC024681012141618200-2-4-6-8-10-12-14-16-18-20Pan-cancer05101520253035400-5-10-15-20-25-30-35-40proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of FMO3 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
ESTIMATE: StromalScore6.6e-195.1e-62.2e-16-0.42-0.123.9e-44.9e-42.7e-90.530.32
ESTIMATE: ESTIMATEScore6.9e-155.0e-42.1e-8-0.48-0.935.1e-52.5e-32.2e-60.650.16
HALLMARK_KRAS_SIGNALING_UP1e-143.5e-52.9e-9-0.66-0.465.0e-40.0587.2e-60.0130.27
xcell: Hematopoietic stem cell3.6e-141.6e-37.5e-7-0.310.923.5e-41.1e-48.3e-50.028-0.94
HALLMARK_UV_RESPONSE_DN9e-141.6e-32.2e-16--0.92-0.470.0095.5e-42.1e-9-0.60.77
cibersort: B cell plasma1.3e-120.0510.022-1.6e-43.6e-50.10.733.1e-50.0820.21
xcell: Cancer associated fibroblast1.6e-128.9e-46.9e-9--0.630.361.1e-32.7e-69.0e-40.68-0.97
xcell: stroma score3.2e-124.1e-43.5e-7-0.96-0.827.4e-41.0e-57.7e-60.870.98
HALLMARK_MYOGENESIS1.2e-111.6e-32.2e-16-0.79-0.0610.113.4e-45.8e-70.770.89
HALLMARK_ANGIOGENESIS5.4e-113.1e-41.4e-9-0.95-0.0460.0080.699e-71.5e-30.42
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of FMO3

BRCA0.66-0.29-0.30proteinmRNASCNVmethylationCCRCC0.860.050.05proteinmRNASCNVmethylationCOAD-0.08proteinmRNASCNVmethylationGBM0.680.100.28proteinmRNASCNVmethylationHNSCC0.770.020.05proteinmRNASCNVmethylationLSCC0.83-0.09-0.12proteinmRNASCNVmethylationLUAD0.70-0.04-0.11proteinmRNASCNVmethylationOV0.700.09-0.05proteinmRNASCNVmethylationPDAC0.59-0.020.02proteinmRNASCNVmethylationUCEC0.21-0.01-0.08proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of FMO3 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.