Basic information

Full name
geranylgeranyl diphosphate synthase 1
Ensembl
ENSG00000152904.11
Summary
This gene is a member of the prenyltransferase family and encodes a protein with geranylgeranyl diphosphate (GGPP) synthase activity. The enzyme catalyzes the synthesis of GGPP from farnesyl diphosphate and isopentenyl diphosphate. GGPP is an important molecule responsible for the C20-prenylation of proteins and for the regulation of a nuclear hormone receptor. Alternate transcriptional splice variants, both protein-coding and non-protein-coding, have been found for this gene. [provided by RefSeq, Sep 2010]
Annotation
Essential genes Druggable target (Tier T2)

Protein product

Phosphosites on the primary protein product
Loading...

Tumor and normal comparison

Loading, please wait
Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA6.3e-9-2.7e-3--0.66-0.391.7e-16-0.029-
protein7.2e-25-4.9e-7-6.2e-3-4.5e-55.3e-31.5e-230.451.4e-100.005

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC8.599.51010.51111.51212.5log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC21.52222.52323.52424.52525.52626.527log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC024681012140-2-4-6-8-10-12-14Pan-cancer0246810121416180-2-4-6-8-10-12-14-16-18proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of GGPS1 with phenotypes and mutations

Loading, please wait
Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
chromosomal instability3.8e-5-0.690.170.240.076-0.530.0530.0880.0341.6e-30.4
Tumor Purity (WGS)4.8e-4-7.4e-4-0.34-0.950.170.79-7.4e-4-0.98
Tumor Purity (ABSOLUTE)1.7e-30.922.5e-30.20.0160.510.120.18-0.710.22-0.21
KRAS mutation0.003--0.15---0.029--0.13
KINASE-PSP_Akt1/AKT10.0057.8e-40.0830.830.21-0.79-0.130.047-0.82-0.645.1e-3
HALLMARK_BILE_ACID_METABOLISM0.0074.5e-3-0.980.420.085-0.9-0.620.520.073-0.590.054
cibersort: Mast cell activated9.6e-30.410.530.310.960.390.480.1-0.620.230.078
HALLMARK_KRAS_SIGNALING_DN0.011-0.930.720.140.160.66-0.50.442.5e-30.670.38
PERT-PSP_SII_ANGIOTENSIN_20.011---0.660.075---0.680.189.8e-3
KINASE-PSP_CAMK2A0.013---0.013------
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of GGPS1

BRCA0.650.400.49proteinmRNASCNVmethylationCCRCC0.22-0.140.28-0.010.07-0.12proteinmRNASCNVmethylationCOAD0.470.260.28proteinmRNASCNVmethylationGBM0.50-0.160.26-0.120.510.00proteinmRNASCNVmethylationHNSCC0.56-0.080.26-0.170.37-0.13proteinmRNASCNVmethylationLSCC0.63-0.150.45-0.160.48-0.32proteinmRNASCNVmethylationLUAD0.59-0.160.58-0.000.67-0.05proteinmRNASCNVmethylationOV0.420.620.49proteinmRNASCNVmethylationPDAC0.48-0.040.360.010.45-0.21proteinmRNASCNVmethylationUCEC0.68-0.200.36-0.260.33-0.40proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of GGPS1 and the protein abundance of other genes

Loading, please wait
Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.