Basic information

Full name
glycine decarboxylase
Ensembl
ENSG00000178445.10
Summary
Degradation of glycine is brought about by the glycine cleavage system, which is composed of four mitochondrial protein components: P protein (a pyridoxal phosphate-dependent glycine decarboxylase), H protein (a lipoic acid-containing protein), T protein (a tetrahydrofolate-requiring enzyme), and L protein (a lipoamide dehydrogenase). The protein encoded by this gene is the P protein, which binds to glycine and enables the methylamine group from glycine to be transferred to the T protein. Defects in this gene are a cause of nonketotic hyperglycinemia (NKH).[provided by RefSeq, Jan 2010]

Protein product

Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA-0.029--1.9e-28--3.1e-85.2e-34.8e-7--0.79-
protein-3.0e-6--4.4e-28---0.23-0.02-0.89-0.96-0.350.001

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC1234567891011121314log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC16171819202122232425262728log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.00.0-0.5-1.0-1.5-2.0-2.5-3.0-3.5-4.0-4.5-5.0-5.5-6.0-6.5-7.0Pan-cancer02468101214160-2-4-6-8-10-12-14-16proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of GLDC with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
cibersort: Neutrophil4.5e-50.0650.14--0.960.0160.0540.022-0.750.90.011
STK11 mutation9.3e-5------9.3e-5---
xcell: B cell plasma1.0e-40.180.82-0.420.0115.6e-33.6e-30.160.85-0.6
PATH-NP_TIE2_PATHWAY2.4e-4----2.9e-30.024---0.26
xcell: B cell2.5e-40.043-0.56--0.110.0299.2e-50.340.940.10.019
HALLMARK_CHOLESTEROL_HOMEOSTASIS2.7e-40.122.2e-5--0.470.024-0.738.8e-30.88-0.280.023
KINASE-PSP_CDK24.1e-40.007-0.62-0.051-0.98-0.36.7e-50.0390.690.29
PROGENy: NFkB9.9e-40.20.14--8.9e-30.288.7e-50.19-0.140.146.3e-4
HALLMARK_IL6_JAK_STAT3_SIGNALING1.6e-30.120.45--3.6e-30.0272.9e-7-0.47-0.110.0621.5e-3
HALLMARK_COMPLEMENT1.6e-30.20.35--4.3e-30.0262.3e-60.92-0.320.110.015
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of GLDC

BRCA0.600.100.11proteinmRNASCNVmethylationCCRCC0.48-0.100.01-0.19-0.140.17proteinmRNASCNVmethylationCOAD0.09proteinmRNASCNVmethylationGBM0.81-0.200.31-0.210.37-0.08proteinmRNASCNVmethylationHNSCC0.76-0.140.25-0.310.300.22proteinmRNASCNVmethylationLSCC0.670.130.39-0.050.410.25proteinmRNASCNVmethylationLUAD0.46-0.260.06-0.30-0.040.36proteinmRNASCNVmethylationOV0.91-0.030.04proteinmRNASCNVmethylationPDAC0.180.250.170.000.050.23proteinmRNASCNVmethylationUCEC0.800.220.050.100.030.18proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of GLDC and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.