Basic information

Full name
isoprenylcysteine carboxyl methyltransferase
Ensembl
ENSG00000116237.16
Summary
This gene encodes the third of three enzymes that posttranslationally modify isoprenylated C-terminal cysteine residues in certain proteins and target those proteins to the cell membrane. This enzyme localizes to the endoplasmic reticulum. Alternative splicing may result in other transcript variants, but the biological validity of those transcripts has not been determined. [provided by RefSeq, Jul 2008]

Protein product

  • ENST00000343813.10 Primary ENSP00000343552.5 (0 phosphosite)
Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA4e-8--5.7e-27--0.566e-111.1e-20-5.5e-5-
protein1.9e-3--2.2e-40.39-7.6e-36.3e-143.4e-120.15-7.9e-5-2.9e-3

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC1010.51111.51212.51313.5log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC18.51919.52020.52121.52222.52323.52424.525log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC01234567890-1-2-3-4-5-6-7-8-9Pan-cancer024681012140-2-4-6-8-10-12-14proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of ICMT with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
PROGENy: EGFR2.1e-60.0130.0150.0110.80.0820.935.2e-30.0240.880.82
HALLMARK_MITOTIC_SPINDLE1.2e-40.380.0724.4e-30.90.740.0370.120.0140.78-0.83
PROGENy: MAPK1.7e-40.0020.130.023-0.380.0810.730.0170.15-0.310.32
HALLMARK_G2M_CHECKPOINT2.7e-40.50.0450.090.58-0.510.0420.0980.0180.930.27
xcell: T cell CD4+ Th16.8e-40.39-0.330.0640.120.120.30.070.490.860.028
KINASE-PSP_ERK1/MAPK38.6e-40.190.0120.95-0.0610.0350.530.0927.8e-30.510.45
KINASE-PSP_CDK10.0010.260.0140.0690.770.390.10.0860.690.79-0.85
TP53 mutation1.2e-30.15--0.990.0080.85-0.13--0.032
HALLMARK_APICAL_JUNCTION1.5e-30.860.0230.0360.98.5e-6-0.380.20.18-0.74-0.61
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION0.0020.360.110.041-0.295.8e-4-0.60.540.0130.43-0.57
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of ICMT

BRCA0.330.120.46proteinmRNASCNVmethylationCCRCC0.40-0.18-0.000.040.14-0.02proteinmRNASCNVmethylationCOAD0.270.400.61proteinmRNASCNVmethylationGBM0.51-0.070.19-0.190.41-0.20proteinmRNASCNVmethylationHNSCC0.62-0.200.35-0.350.50-0.28proteinmRNASCNVmethylationLSCC0.62-0.270.56-0.260.54-0.31proteinmRNASCNVmethylationLUAD0.45-0.030.41-0.140.51-0.12proteinmRNASCNVmethylationOV0.590.490.71proteinmRNASCNVmethylationPDAC0.060.080.04-0.010.550.03proteinmRNASCNVmethylationUCEC0.270.060.060.140.24-0.03proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of ICMT and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.