Gene: ORM1

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
orosomucoid 1
Ensembl
ENSG00000229314.5
Summary
This gene encodes a key acute phase plasma protein. Because of its increase due to acute inflammation, this protein is classified as an acute-phase reactant. The specific function of this protein has not yet been determined; however, it may be involved in aspects of immunosuppression. [provided by RefSeq, Jul 2008]
Annotation
Ligand

Protein product

Phosphosites on the primary protein product

Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA0.46-2.9e-5--1.8e-3-1.5e-70.76--0.49-
protein-2.1e-36-0.02-3.4e-9--1.4e-21-2.9e-24-9.1e-25-0.0785.9e-7-1.1e-7

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0246810121416log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC252627282930313233log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC01234567891011120-1-2-3-4-5-6-7-8-9-10-11-12Pan-cancer0510152025300-5-10-15-20-25-30proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of ORM1 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_HYPOXIA2.1e-321.7e-31.0e-43.1e-33.9e-73.7e-62.8e-63.1e-50.148.5e-43.5e-5
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION9.5e-272.2e-51.7e-51.9e-42.9e-56.3e-51.5e-40.0420.110.0089.2e-4
xcell: Endothelial cell2.1e-251.8e-81.3e-30.280.0381.3e-31.6e-61.3e-45.2e-40.0131.5e-3
HALLMARK_ANGIOGENESIS6.4e-252.9e-61.3e-51.1e-47.4e-57.4e-54.6e-88.5e-40.022-0.0920.018
HALLMARK_KRAS_SIGNALING_UP6e-235.2e-59.1e-70.0157.5e-100.0181.4e-50.210.0710.685.0e-4
HALLMARK_MYOGENESIS4e-214.3e-69.8e-50.0481.9e-50.0773.5e-4-0.820.0523.9e-59.2e-5
ESTIMATE: StromalScore4.8e-211.5e-66.4e-52.3e-38.3e-70.0225.6e-40.940.31.9e-32.5e-3
HALLMARK_UV_RESPONSE_DN2.2e-203.8e-103.8e-60.051.1e-40.121.7e-30.880.0537.9e-30.002
HALLMARK_TNFA_SIGNALING_VIA_NFKB3.6e-200.125.8e-30.0112.7e-70.0042.8e-73.4e-30.0680.17.2e-3
HALLMARK_APICAL_JUNCTION1.1e-192.2e-66.0e-50.0898.4e-58.3e-43.8e-4-0.0690.0311.7e-48.0e-4
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of ORM1

BRCA-0.14-0.13-0.18proteinmRNASCNVmethylationCCRCC0.060.13-0.00proteinmRNASCNVmethylationCOAD0.330.09-0.08proteinmRNASCNVmethylationGBM0.460.120.07proteinmRNASCNVmethylationHNSCC0.18-0.12-0.17proteinmRNASCNVmethylationLSCC0.38-0.01-0.13proteinmRNASCNVmethylationLUAD-0.04-0.060.01proteinmRNASCNVmethylationOV-0.010.13-0.18proteinmRNASCNVmethylationPDAC-0.110.05-0.06proteinmRNASCNVmethylationUCEC0.22-0.160.01proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of ORM1 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.