Basic information

Full name
paired box 5
Ensembl
ENSG00000196092.14
Summary
This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. Paired box transcription factors are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. This gene encodes the B-cell lineage specific activator protein that is expressed at early, but not late stages of B-cell differentiation. Its expression has also been detected in developing CNS and testis and so the encoded protein may also play a role in neural development and spermatogenesis. This gene is located at 9p13, which is involved in t(9;14)(p13;q32) translocations recurring in small lymphocytic lymphomas of the plasmacytoid subtype, and in derived large-cell lymphomas. This translocation brings the potent E-mu enhancer of the IgH gene into close proximity of the PAX5 promoter, suggesting that the deregulation of transcription of this gene contributes to the pathogenesis of these lymphomas. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
Annotation
Cancer driver (Oncogene) Cancer driver (TSG) Transcription factor

Protein product

  • ENST00000358127.9 Primary ENSP00000350844.4 (0 phosphosite)
  • ENST00000651550.1
  • ENST00000522003.5
  • ENST00000523145.5
  • ENST00000377853.6
  • ENST00000377852.7
  • ENST00000414447.5
  • ENST00000377847.6
  • ENST00000523241.6
  • ENST00000520281.5
  • ENST00000520154.6
  • ENST00000446742.5
Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA1.1e-26-0.098--1.2e-102.4e-94.7e-20-0.5-
protein-----------

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC012345678910111213log2(RSEM+1)tumornormal
Protein expression
HNSCCLSCCOVPDAC1313.51414.51515.51616.51717.51818.51919.5log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0246810121416182022242628300-2-4-6-8-10-12-14-16-18-20-22-24-26-28-30Pan-cancer051015202530354045505560650-5-10-15-20-25-30-35-40-45-50-55-60-65proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of PAX5 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
cibersort: Mast cell resting1.1e-3--------1.1e-3-
HALLMARK_HEME_METABOLISM1.7e-3--------1.7e-3-
HALLMARK_IL2_STAT5_SIGNALING3.8e-3--------3.8e-3-
HALLMARK_UV_RESPONSE_UP0.011--------0.011-
HALLMARK_ANDROGEN_RESPONSE0.015--------0.015-
xcell: T cell CD4+ central memory0.017--------0.017-
cibersort: B cell naive0.02--------0.02-
HALLMARK_HYPOXIA0.027--------0.028-
HALLMARK_APOPTOSIS0.032--------0.032-
PROGENy: TNFa0.033--------0.033-
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of PAX5

BRCA0.18proteinmRNASCNVmethylationCCRCC-0.04-0.03-0.23proteinmRNASCNVmethylationCOAD0.12proteinmRNASCNVmethylationGBM0.070.210.15proteinmRNASCNVmethylationHNSCC-0.120.120.35proteinmRNASCNVmethylationLSCC0.070.090.28proteinmRNASCNVmethylationLUAD-0.130.150.19proteinmRNASCNVmethylationOV0.30proteinmRNASCNVmethylationPDAC0.470.080.140.070.030.19proteinmRNASCNVmethylationUCEC-0.040.140.05proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of PAX5 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.