Basic information

Full name
protocadherin beta 11
Ensembl
ENSG00000197479.7
Summary
This gene is a member of the protocadherin beta gene cluster, one of three related gene clusters tandemly linked on chromosome five. The gene clusters demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The beta cluster contains 16 genes and 3 pseudogenes, each encoding 6 extracellular cadherin domains and a cytoplasmic tail that deviates from others in the cadherin superfamily. The extracellular domains interact in a homophilic manner to specify differential cell-cell connections. Unlike the alpha and gamma clusters, the transcripts from these genes are made up of only one large exon, not sharing common 3' exons as expected. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins. Their specific functions are unknown but they most likely play a critical role in the establishment and function of specific cell-cell neural connections. [provided by RefSeq, Jul 2008]

Protein product

  • ENST00000354757.5 Primary ENSP00000346802.3 (0 phosphosite)
  • ENST00000624887.1
Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA1.5e-3-7.6e-6--0.630.0320.085--0.087-
protein-0.45------0.4--0.83--

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC123456789101112log2(RSEM+1)tumornormal
Protein expression
GBMLSCCOVUCEC141516171819202122log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0123456789100-1-2-3-4-5-6-7-8-9-10Pan-cancer02468101214160-2-4-6-8-10-12-14-16proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of PCDHB11 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Clinical: Histologic_Grade9.5e-3-------0.1-0.043
cibersort: T cell gamma delta0.023-----0.1-0.54-0.093
SBS6 (defective DNA mismatch repair)0.05-------0.05--
xcell: T cell CD4+ memory0.055------0.94-0.35-0.014
SBS7a (UVR)0.056---------0.056
KINASE-PSP_CDK50.059-----0.077---0.37
xcell: T cell CD8+ effector memory0.064-----0.24--0.37-3.5e-3
SBS13 (APOBEC activity)0.072-----0.15-0.27--
xcell: T cell CD8+0.093-----0.34--0.37-4.3e-3
HALLMARK_NOTCH_SIGNALING0.11-----0.23-0.52-0.34
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of PCDHB11

BRCA0.13proteinmRNASCNVmethylationCCRCC0.15proteinmRNASCNVmethylationCOAD-0.06proteinmRNASCNVmethylationGBM0.20proteinmRNASCNVmethylationHNSCC-0.11proteinmRNASCNVmethylationLSCC0.53-0.100.03proteinmRNASCNVmethylationLUAD0.07proteinmRNASCNVmethylationOV0.77-0.080.14proteinmRNASCNVmethylationPDAC0.10proteinmRNASCNVmethylationUCEC0.54-0.17-0.04proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of PCDHB11 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.