Basic information

Full name
proprotein convertase subtilisin/kexin type 2
Ensembl
ENSG00000125851.10
Summary
This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. The protein undergoes an initial autocatalytic processing event and interacts with a neuroendocrine secretory protein in the ER, exits the ER and sorts to secretory granules, where it is cleaved and catalytically activated during intracellular transport. The encoded protease is packaged into and activated in dense core secretory granules and expressed in the neuroendocrine system and brain. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. It functions in the proteolytic activation of polypeptide hormones and neuropeptides precursors. Single nucleotide polymorphisms in this gene may increase susceptibility to myocardial infarction and type 2 diabetes. This gene may also play a role in tumor development and progression. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jan 2014]

Protein product

  • ENST00000262545.7 Primary ENSP00000262545.2 (0 phosphosite)
  • ENST00000377899.5
  • ENST00000536609.1
Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA-1.7e-70--3.8e-24---2.1e-16-1.3e-19-1.4e-16--5.9e-5-
protein-6.4e-3---------6.4e-3-

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC01234567891011121314log2(RSEM+1)tumornormal
Protein expression
GBMLSCCLUADOVPDAC1415161718192021222324252627log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0510152025303540450-5-10-15-20-25-30-35-40-45Pan-cancer05101520253035400-5-10-15-20-25-30-35-40proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of PCSK2 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
DISEASE-PSP_Alzheimer's_disease2.2e-16---2.2e-16------
HALLMARK_PANCREAS_BETA_CELLS3e-12---8.9e-5-0.860.097-2.2e-16-
xcell: Hematopoietic stem cell2.1e-4---0.041-0.310.72-6.4e-5-
HALLMARK_KRAS_SIGNALING_DN5.8e-4---5.4e-6-0.470.59-0.28-
HALLMARK_HEDGEHOG_SIGNALING2.3e-3---0.042-0.11-0.058-1.2e-5-
Clinical: Age0.014---0.031-0.30.67-0.2-
HALLMARK_HEME_METABOLISM0.052---0.22-0.950.18-0.21-
HALLMARK_SPERMATOGENESIS0.055---1.2e-3--0.92-0.14-0.029-
KINASE-PSP_CDK50.057---2.8e-4-0.84---0.59-
PROGENy: Estrogen0.06----0.78-0.580.47-5.7e-3-
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of PCSK2

BRCA0.01proteinmRNASCNVmethylationCCRCC0.040.070.13proteinmRNASCNVmethylationCOAD-0.07proteinmRNASCNVmethylationGBM0.590.100.080.010.050.32proteinmRNASCNVmethylationHNSCC-0.16-0.000.00proteinmRNASCNVmethylationLSCC0.12-0.350.27-0.120.16-0.16proteinmRNASCNVmethylationLUAD0.570.040.35-0.150.220.04proteinmRNASCNVmethylationOV0.29proteinmRNASCNVmethylationPDAC0.840.060.00-0.02-0.030.16proteinmRNASCNVmethylationUCEC-0.070.03-0.31proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of PCSK2 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.