Basic information

Full name
pyruvate dehydrogenase complex component X
Ensembl
ENSG00000110435.12
Summary
The pyruvate dehydrogenase (PDH) complex is located in the mitochondrial matrix and catalyzes the conversion of pyruvate to acetyl coenzyme A. The PDH complex thereby links glycolysis to Krebs cycle. The PDH complex contains three catalytic subunits, E1, E2, and E3, two regulatory subunits, E1 kinase and E1 phosphatase, and a non-catalytic subunit, E3 binding protein (E3BP). This gene encodes the E3 binding protein subunit; also known as component X of the pyruvate dehydrogenase complex. This protein tethers E3 dimers to the E2 core of the PDH complex. Defects in this gene are a cause of pyruvate dehydrogenase deficiency which results in neurological dysfunction and lactic acidosis in infancy and early childhood. This protein is also a minor antigen for antimitochondrial antibodies. These autoantibodies are present in nearly 95% of patients with the autoimmune liver disease primary biliary cirrhosis (PBC). In PBC, activated T lymphocytes attack and destroy epithelial cells in the bile duct where this protein is abnormally distributed and overexpressed. PBC eventually leads to cirrhosis and liver failure. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Oct 2009]

Protein product

Phosphosites on the primary protein product
Loading...

Tumor and normal comparison

Loading, please wait
Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA0.017--8.3e-16---0.793.4e-168.2e-4-0.029-
protein-1.7e-8--3.9e-28-5.9e-3--4.4e-136.5e-41.5e-80.99-1.2e-122.2e-3

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC8.599.51010.51111.51212.513log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC23.52424.52525.52626.52727.52828.529log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC0123456789100-1-2-3-4-5-6-7-8-9-10Pan-cancer024681012141618200-2-4-6-8-10-12-14-16-18-20proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of PDHX with phenotypes and mutations

Loading, please wait
Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_OXIDATIVE_PHOSPHORYLATION3.1e-70.130.033-0.39-0.320.480.111.7e-31.5e-30.011.4e-3
HALLMARK_KRAS_SIGNALING_DN2.0e-50.27-0.0850.0555.5e-82.8e-60.043-0.630.430.013-5.9e-3
chromosomal instability1.2e-40.843.6e-33.1e-4-0.72-0.0973.1e-44.7e-30.0430.86-0.25
xcell: B cell plasma1.3e-40.298.3e-3-0.130.040.013-0.650.560.680.0951.5e-3
HALLMARK_FATTY_ACID_METABOLISM1.5e-40.690.2-0.14-0.144.6e-30.0790.130.174.5e-33.6e-3
HALLMARK_BILE_ACID_METABOLISM1.6e-40.130.0460.140.430.01-0.39-0.480.464.9e-30.11
Tumor Purity (ABSOLUTE)1.6e-40.220.140.0030.91-0.31.4e-30.660.0960.530.2
DISEASE-PSP_Alzheimer's_disease4.5e-4---2.1e-6-----0.83
HALLMARK_SPERMATOGENESIS6.7e-40.04-0.59-0.0130.017-0.683.1e-41.4e-30.360.170.51
HALLMARK_PEROXISOME7.7e-40.0640.13-0.890.89-0.530.1-0.490.020.0160.025
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of PDHX

BRCA0.24-0.030.47proteinmRNASCNVmethylationCCRCC0.10-0.06-0.09proteinmRNASCNVmethylationCOAD0.170.290.44proteinmRNASCNVmethylationGBM0.260.040.34proteinmRNASCNVmethylationHNSCC0.220.150.53proteinmRNASCNVmethylationLSCC0.330.100.43proteinmRNASCNVmethylationLUAD0.460.310.45proteinmRNASCNVmethylationOV0.520.270.57proteinmRNASCNVmethylationPDAC0.000.110.23proteinmRNASCNVmethylationUCEC0.460.260.35proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of PDHX and the protein abundance of other genes

Loading, please wait
Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.