Basic information

Full name
proopiomelanocortin
Ensembl
ENSG00000115138.11
Summary
This gene encodes a preproprotein that undergoes extensive, tissue-specific, post-translational processing via cleavage by subtilisin-like enzymes known as prohormone convertases. There are eight potential cleavage sites within the preproprotein and, depending on tissue type and the available convertases, processing may yield as many as ten biologically active peptides involved in diverse cellular functions. The encoded protein is synthesized mainly in corticotroph cells of the anterior pituitary where four cleavage sites are used; adrenocorticotrophin, essential for normal steroidogenesis and the maintenance of normal adrenal weight, and lipotropin beta are the major end products. In other tissues, including the hypothalamus, placenta, and epithelium, all cleavage sites may be used, giving rise to peptides with roles in pain and energy homeostasis, melanocyte stimulation, and immune modulation. These include several distinct melanotropins, lipotropins, and endorphins that are contained within the adrenocorticotrophin and beta-lipotropin peptides. The antimicrobial melanotropin alpha peptide exhibits antibacterial and antifungal activity. Mutations in this gene have been associated with early onset obesity, adrenal insufficiency, and red hair pigmentation. Alternatively spliced transcript variants encoding the same protein have been described. [provided by RefSeq, Jan 2016]
Annotation
Ligand

Protein product

Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA0.6-8.5e-3--0.715.8e-7-1.7e-3--2.5e-4-
protein5.2e-4----0.22.8e-4----

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC1234567891011log2(RSEM+1)tumornormal
Protein expression
HNSCCLSCCUCEC151617181920212223log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC02468101214160-2-4-6-8-10-12-14-16Pan-cancer0246810121416180-2-4-6-8-10-12-14-16-18proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of POMC with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Tumor Purity (ABSOLUTE)2.0e-5----4.5e-42.4e-3---0.4
HALLMARK_SPERMATOGENESIS4.9e-5----0.0253.2e-4---0.23
Tumor Purity (WGS)1.7e-4----0.0224.8e-3---0.16
chromosomal instability7.6e-4----0.0212.1e-4----0.86
HALLMARK_E2F_TARGETS1.9e-3----0.118.2e-4---0.68
HALLMARK_MYC_TARGETS_V22.8e-3----0.0142.9e-3----0.79
HALLMARK_WNT_BETA_CATENIN_SIGNALING4.2e-3----0.640.018---0.035
cibersort: Macrophage M08.7e-3----0.0640.029---0.61
PROGENy: Hypoxia0.013----0.0560.09---0.49
KINASE-PSP_PLK10.014----7.3e-3----0.44
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of POMC

BRCA0.25proteinmRNASCNVmethylationCCRCC-0.000.080.08proteinmRNASCNVmethylationCOAD-0.23proteinmRNASCNVmethylationGBM-0.03-0.050.03proteinmRNASCNVmethylationHNSCC0.62-0.480.38-0.010.25-0.30proteinmRNASCNVmethylationLSCC0.78-0.230.22-0.280.33-0.08proteinmRNASCNVmethylationLUAD-0.150.18-0.08proteinmRNASCNVmethylationOV0.15proteinmRNASCNVmethylationPDAC-0.060.050.10proteinmRNASCNVmethylationUCEC0.780.11-0.140.010.04-0.11proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of POMC and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.