Gene: RBM34

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
RNA binding motif protein 34
Ensembl
ENSG00000188739.15
Summary
This gene encodes a member of the RNA-binding motif family of RNA recognition motif proteins. The encoded protein contains an RNA-binding domain made up of two RNA recognition motif subdomains referred to as RNA recognition motif-1 and RNA recognition motif-2. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]

Protein product

Phosphosites on the primary protein product

Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA4.7e-57-1.2e-22--2e-107.1e-232.9e-9-2.6e-4-
protein2e-90-1.7e-235.7e-25-5.3e-211.6e-329.4e-136.4e-6-0.151.6e-7

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC99.51010.51111.51212.5log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC2020.52121.52222.52323.52424.525log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC02468101214160-2-4-6-8-10-12-14-16Pan-cancer051015202530354045500-5-10-15-20-25-30-35-40-45-50proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of RBM34 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_MYC_TARGETS_V24.2e-504.4e-96.3e-50.161.6e-41.3e-88.3e-92.2e-169.6e-57.2e-82.2e-3
KINASE-PSP_CDK21.1e-301.2e-60.020.0240.0351.1e-84.9e-52.2e-160.652.2e-50.029
HALLMARK_E2F_TARGETS2.1e-273.9e-80.0330.0150.0631.1e-73.7e-42.1e-90.636.3e-60.012
HALLMARK_G2M_CHECKPOINT2.1e-252.3e-89.5e-30.0310.181.5e-64.1e-43.9e-10-0.952.4e-50.013
PERT-PSP_NOCODAZOLE9e-251.1e-80.001-0.372.0e-42.7e-78.2e-51.8e-8-0.934.8e-40.011
HALLMARK_MYC_TARGETS_V12.6e-239.4e-60.23.9e-30.0181.7e-36.0e-61.4e-90.58.8e-60.097
HALLMARK_MTORC1_SIGNALING5.4e-229.7e-51.3e-30.45.8e-34.6e-44.7e-59.8e-80.871.8e-50.016
KINASE-PSP_CDK11.8e-216e-80.0220.285.4e-32.6e-71.1e-43.1e-9-0.371.3e-30.21
HALLMARK_UNFOLDED_PROTEIN_RESPONSE7.6e-201.9e-52.2e-50.112.3e-4-0.810.0371.2e-60.61.3e-56.3e-4
HALLMARK_DNA_REPAIR1.3e-190.0210.0390.20.0142.8e-64.2e-51.7e-40.0214.1e-40.031
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of RBM34

BRCA0.340.070.57proteinmRNASCNVmethylationCCRCC0.26-0.070.19-0.090.49-0.19proteinmRNASCNVmethylationCOAD0.230.330.33proteinmRNASCNVmethylationGBM0.16-0.040.08-0.280.36-0.02proteinmRNASCNVmethylationHNSCC0.53-0.190.41-0.250.64-0.32proteinmRNASCNVmethylationLSCC0.28-0.010.21-0.250.53-0.23proteinmRNASCNVmethylationLUAD0.150.110.020.170.57-0.04proteinmRNASCNVmethylationOV0.390.310.41proteinmRNASCNVmethylationPDAC-0.06-0.01-0.00-0.090.62-0.14proteinmRNASCNVmethylationUCEC0.01-0.000.15-0.230.45-0.49proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of RBM34 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.