Gene: RBX1

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
ring-box 1
Ensembl
ENSG00000100387.9
Summary
This locus encodes a RING finger-like domain-containing protein. The encoded protein interacts with cullin proteins and likely plays a role in ubiquitination processes necessary for cell cycle progression. This protein may also affect protein turnover. Related pseudogenes exist on chromosomes 2 and 5.[provided by RefSeq, Sep 2010]
Annotation
Essential genes

Protein product

  • ENST00000216225.9 Primary ENSP00000216225.8 (0 phosphosite)
Phosphosites on the primary protein product

Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA5.6e-11-1.5e-21---0.154e-7-0.28-0.01-
protein3.1e-15-0.038-0.012-7.8e-91.2e-65.3e-260.970.260.7

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC88.599.51010.51111.51212.513log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC22.52323.52424.52525.52626.527log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC02468101214160-2-4-6-8-10-12-14-16Pan-cancer0510152025303540450-5-10-15-20-25-30-35-40-45proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of RBX1 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
cibersort: Neutrophil4e-7-0.130.460.190.980.0630.0130.310.242.5e-87.2e-4
KINASE-PSP_ERK2/MAPK11.1e-6-0.0470.0332.0e-5-0.767.3e-30.0313.0e-40.53-0.432.8e-3
KINASE-PSP_GSK3B1.1e-6---0.034.4e-40.026--0.220.079
KINASE-PSP_CDK19.9e-6-0.30.580.35-0.121.2e-33.0e-45.1e-40.840.0270.02
KINASE-PSP_CDK21.0e-5-0.220.08-0.64-0.656.2e-50.170.0020.120.0060.12
HALLMARK_SPERMATOGENESIS2.5e-5-0.710.045-0.940.139.6e-40.510.010.130.01-0.73
cibersort: Mast cell resting3.0e-40.65-0.720.16-0.220.0511.5e-30.630.130.120.015
cibersort: Macrophage M04.6e-4-0.0930.0370.44-0.730.0660.110.01810.040.017
KINASE-PSP_ERK1/MAPK31.1e-3-0.0940.222.4e-4-0.170.0267.3e-30.17-0.760.780.027
PROGENy: PI3K1.5e-30.882.7e-4-0.47-0.920.620.40.0360.570.340.036
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of RBX1

BRCA-0.100.120.45proteinmRNASCNVmethylationCCRCC-0.100.00-0.060.090.11-0.15proteinmRNASCNVmethylationCOAD0.140.010.20proteinmRNASCNVmethylationGBM0.19-0.010.24-0.050.60-0.18proteinmRNASCNVmethylationHNSCC0.04-0.110.02-0.110.30-0.08proteinmRNASCNVmethylationLSCC0.250.01-0.00-0.210.50-0.21proteinmRNASCNVmethylationLUAD-0.09-0.04-0.07-0.120.59-0.15proteinmRNASCNVmethylationOV0.000.090.15proteinmRNASCNVmethylationPDAC0.08-0.030.020.060.52-0.12proteinmRNASCNVmethylationUCEC0.100.06-0.000.150.110.12proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of RBX1 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.