Protein: ENSP00000215793
Gene: SF3A1

LinkedOmicsKB © 2022-2023 Zhang Lab

SF3A1:
splicing factor 3a subunit 1

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S28QPTEEEASSKEDSAP154--------3321----------
S320RYEKFGESEEVEMEV4756-------10714141212------
S329EVEMEVESDEEDDKQ101553122-103809710099-10862108991101018319105449518
T350PSQLDQDTQVQDMDE819841-4535--9-116441312--927-
S359VQDMDEGSDDEEEGQ101505113-10380929699-10862108991101015715105449518
T374KVPPPPETPMPPPLP338----------5554----19-
T383MPPPLPPTPDQVIVR98539-5852--54-8047555111010019572289518
Y410PAPAPDEYLVSPITG33618---------5544------
S413APDEYLVSPITGEKI1093864-3328392417-108627872766762105449518
S451RSIREKQSDDEVYAP9334--32311745-28171413897-26126618
Showing 1 to 10 of 12 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S28QPTEEEASSKEDSAP0.037----0.037-----
S320RYEKFGESEEVEMEV-----------
S329EVEMEVESDEEDDKQ3.4e-24--1.2e-161.1e-21-7.3e-36.7e-324e-224.8e-4-0.030.055
T350PSQLDQDTQVQDMDE-1.5e-4--1.5e-4--------
S359VQDMDEGSDDEEEGQ4.7e-13--9.9e-161.2e-4-1.9e-124e-292.7e-29-6.6e-3-4.1e-40.15
T374KVPPPPETPMPPPLP-----------
T383MPPPLPPTPDQVIVR-0.19-0.86---2.7e-70.2-1.2e-5--0.492.8e-8
Y410PAPAPDEYLVSPITG-----------
S413APDEYLVSPITGEKI1.5e-3--0.970.23--0.0711.7e-45.2e-7--2.9e-76.3e-8
S451RSIREKQSDDEVYAP0.43-0.02---6.4e-3---0.70.11
Showing 1 to 10 of 12 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationCCRCCS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationCOADS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationGBMS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationHNSCCS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationLSCCS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationLUADS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationOVS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationPDACS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylationUCECS28S320S329T350S359T374T383Y410S413S451Y456S465proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.