PAPOLA:
poly(A) polymerase alpha

Lollipop plot

Phosphosites location and occurrence

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Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S10FPVTTQGSQQTQPPQ224--------125--------52
S24QKHYGITSPISLAAP10130473-6754877599-10159898192857518102428718
S27YGITSPISLAAPKET199-------------------
S509LQKKKKHSTEGVKLT19------9-------------
S526NDSSLDLSMDSDNSM46135-4445------54------
S529SLDLSMDSDNSMSVP372--8899------------2414
S532LSMDSDNSMSVPSPT368--8845------------367
S534MDSDNSMSVPSPTSA222--54--------------112
S537DNSMSVPSPTSATKT10108088-3028615690-794698911009330454199518
S545PTSATKTSPLNSSGS997513---929691-362078727164761796409518
Showing 1 to 10 of 23 rows
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S10FPVTTQGSQQTQPPQ-----------
S24QKHYGITSPISLAAP2.3e-33--1.6e-83.2e-23-4.8e-111.3e-262.8e-281.7e-4-5.8e-81.6e-3
S27YGITSPISLAAPKET-----------
S509LQKKKKHSTEGVKLT-----------
S526NDSSLDLSMDSDNSM-----------
S529SLDLSMDSDNSMSVP0.5---------0.5
S532LSMDSDNSMSVPSPT-----------
S534MDSDNSMSVPSPTSA-----------
S537DNSMSVPSPTSATKT4e-11--0.0260.99-0.0166.1e-138.8e-10-0.0580.04
S545PTSATKTSPLNSSGS4.4e-26--5e-10-1.9e-41.6e-243.6e-160.85-4.8e-43.4e-3
Showing 1 to 10 of 23 rows
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationCCRCCS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationCOADS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationGBMS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationHNSCCS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationLSCCS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationLUADS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationOVS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationPDACS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylationUCECS10S24S27S509S526S529S532S534S537S545S550S552S553T644T652S653S654S660T671S672S681T719S738proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.