Protein: ENSP00000217971
Gene: PGRMC1

LinkedOmicsKB © 2022-2023 Zhang Lab

PGRMC1:
progesterone receptor membrane component 1

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S54RGDQPAASGDSDDDE18--44----------------
S57QPAASGDSDDDEPPP101535113-103809710099-10862108991101017518105449518
T74RLKRRDFTPAELRRF10102841-8469857763-281788816660751847169518
Y113FYGPEGPYGVFAGRD236------26---55--------
T178LKEGEEPTVYSDEEE18--8-----------------
Y180EGEEPTVYSDEEEPK932680-41401116--9825232625815152
S181GEEPTVYSDEEEPKD101553122-103809710099-10862108991101018319105449518
S190EEEPKDESARKND__1034914-178675810-24131072723205722116
Showing 1 to 8 of 8 rows

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S54RGDQPAASGDSDDDE-----------
S57QPAASGDSDDDEPPP-2.4e-4--1.7e-90.021-6.7e-6-0.80.18-2.2e-3-8.0e-4-4.3e-9
T74RLKRRDFTPAELRRF1.7e-19--6.2e-41.5e-8-2.0e-54.8e-162.1e-100.150.0630.21
Y113FYGPEGPYGVFAGRD-----------
T178LKEGEEPTVYSDEEE-----------
Y180EGEEPTVYSDEEEPK-0.5--0.031---0.40.89---
S181GEEPTVYSDEEEPKD-0.25--7.4e-8-8.4e-4-0.920.568.8e-40.0193.3e-6-3e-8
S190EEEPKDESARKND__0.19--0.47-0.11-0.073---0.13
Showing 1 to 8 of 8 rows

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationCCRCCS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationCOADS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationGBMS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationHNSCCS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationLSCCS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationLUADS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationOVS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationPDACS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylationUCECS54S57T74Y113T178Y180S181S190proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.