FDFT1: farnesyl-diphosphate farnesyltransferase 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1ezf chain A
1ezf chain B
1ezf chain C
3asx chain A
3lee chain A
3lee chain B
3lee chain C
3lee chain D
3lee chain E
3lee chain F
3q2z chain A
3q30 chain A
3v66 chain A
3vj8 chain A
3vj9 chain A
3vja chain A
3vja chain B
3vjb chain A
3vjb chain B
3vjb chain C
3vjb chain D
3vjb chain E
3vjb chain F
3vjc chain A
3vjc chain B
3vjc chain C
3vjc chain D
3vjc chain E
3vjc chain F
3wc9 chain A
3wc9 chain B
3wc9 chain C
3wc9 chain D
3wc9 chain E
3wc9 chain F
3wcd chain A
3wcd chain B
3wcd chain C
3wcd chain D
3wcd chain E
3wcd chain F
3wcf chain A
3wcf chain B
3wcf chain C
3wcf chain D
3wcf chain E
3wcf chain F
3wch chain A
3wch chain B
3wch chain C
3wch chain D
3wch chain E
3wch chain F
3wci chain A
3wci chain B
3wci chain C
3wci chain D
3wci chain E
3wci chain F
3wcj chain A
3wcj chain B
3wcj chain C
3wcj chain D
3wcj chain E
3wcj chain F
3wcl chain A
3wcl chain B
3wcl chain C
3wcl chain D
3wcl chain E
3wcl chain F
3wcm chain A
3wcm chain B
3wcm chain C
3wcm chain D
3wcm chain E
3wcm chain F
3wef chain A
3wef chain B
3wef chain C
3wef chain D
3wef chain E
3wef chain F
3weg chain A
3weh chain A
3wei chain A
3wej chain A
3wek chain A
3wsa chain A
3wsa chain B
3wsa chain C
3wsa chain D
3wsa chain E
3wsa chain F
6pyj chain C
6pyv chain C
6pyw chain C
6pz5 chain C
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S89 LEDDMTIS VEKKVPL 1 5 - - - - - - - - - - - - - - - - - - 5 -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S89 LEDDMTIS VEKKVPL - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S89 protein RNA SCNV methylation CCRCC S89 protein RNA SCNV methylation COAD S89 protein RNA SCNV methylation GBM S89 protein RNA SCNV methylation HNSCC S89 protein RNA SCNV methylation LSCC S89 protein RNA SCNV methylation LUAD S89 protein RNA SCNV methylation OV S89 protein RNA SCNV methylation PDAC S89 protein RNA SCNV methylation UCEC S89 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S89
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S89
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.