GAPDH: glyceraldehyde-3-phosphate dehydrogenase
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1u8f chain O
1u8f chain P
1u8f chain Q
1u8f chain R
1znq chain O
1znq chain P
1znq chain Q
1znq chain R
3gpd chain G
3gpd chain R
4wnc chain A
4wnc chain B
4wnc chain C
4wnc chain D
4wnc chain E
4wnc chain F
4wnc chain G
4wnc chain O
4wni chain A
4wni chain B
4wni chain C
4wni chain O
6ade chain A
6ade chain B
6ade chain C
6iq6 chain A
6iq6 chain B
6iq6 chain C
6iq6 chain D
6iq6 chain E
6iq6 chain F
6iq6 chain G
6iq6 chain H
6m61 chain O
6m61 chain P
6m61 chain Q
6m61 chain R
6ynd chain A
6ynd chain B
6ynd chain C
6ynd chain D
6ynd chain E
6ynd chain F
6ynd chain G
6ynd chain H
6yne chain A
6yne chain B
6yne chain C
6yne chain D
6ynf chain A
6ynf chain B
6ynf chain C
6ynf chain D
6ynf chain E
6ynf chain F
6ynf chain G
6ynf chain H
6ynh chain B
6ynh chain D
6ynh chain F
6ynh chain G
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S25 VTRAAFNS GKVDIVA 6 400 - - - - - - 99 - - - 69 61 9 8 13 4 47 20 54 16 T75 VINGNPIT IFQERDP 7 263 44 - 62 50 7 11 27 - 29 17 - - - - 6 2 - - 6 2 S83 IFQERDPS KIKWGDA 10 992 21 - 13 10 97 100 99 - 97 56 45 41 61 57 29 4 105 44 95 18 Y94 WGDAGAEY VVESTGV 2 27 - - - - 6 12 9 - - - - - - - - - - - - - S98 GAEYVVES TGVFTTM 5 90 - - - - 6 12 9 - 5 4 10 9 18 17 - - - - - - T99 AEYVVEST GVFTTME 1 9 - - - - 3 6 - - - - - - - - - - - - - - T104 ESTGVFTT MEKAGAH 2 26 - - - - - - 9 - 10 7 - - - - - - - - - - S122 GAKRVIIS APSADAP 1 9 - - - - - - 9 - - - - - - - - - - - - - S125 RVIISAPS ADAPMFV 5 154 - - 8 - - - 36 - 31 20 19 16 12 12 - - - - - - Y140 MGVNHEKY DNSLKII 1 9 - - - - - - - - - - - - 5 4 - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S25 VTRAAFNS GKVDIVA 8.5e-10 - - - - - 4.3e-20 - - -0.18 5.3e-3 T75 VINGNPIT IFQERDP -0.27 - 0.48 - - -0.025 - - - - - S83 IFQERDPS KIKWGDA 5.7e-21 - - 0.19 - -8.3e-3 7.1e-20 3.2e-14 - 5.2e-5 3.5e-4 Y94 WGDAGAEY VVESTGV - - - - - - - - - - - S98 GAEYVVES TGVFTTM - - - - - - - - - - - T99 AEYVVEST GVFTTME - - - - - - - - - - - T104 ESTGVFTT MEKAGAH - - - - - - - - - - - S122 GAKRVIIS APSADAP - - - - - - - - - - - S125 RVIISAPS ADAPMFV -6.2e-6 - - - - -6.2e-6 - - - - - Y140 MGVNHEKY DNSLKII - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S25
T75
S83
Y94
S98
T99
T104
S122
S125
Y140
S148
S151
T153
T154
T176
T177
T182
T184
T187
S192
S210
T211
T229
T237
S241
S266
S288
S321
S333
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation CCRCC S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation COAD S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation GBM S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation HNSCC S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation LSCC S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation LUAD S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation OV S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation PDAC S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation UCEC S25 T75 S83 Y94 S98 T99 T104 S122 S125 Y140 S148 S151 T153 T154 T176 T177 T182 T184 T187 S192 S210 T211 T229 T237 S241 S266 S288 S321 S333 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S25
T75
S83
Y94
S98
T99
T104
S122
S125
Y140
S148
S151
T153
T154
T176
T177
T182
T184
T187
S192
S210
T211
T229
T237
S241
S266
S288
S321
S333
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S25
T75
S83
Y94
S98
T99
T104
S122
S125
Y140
S148
S151
T153
T154
T176
T177
T182
T184
T187
S192
S210
T211
T229
T237
S241
S266
S288
S321
S333
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.