TARDBP: TAR DNA binding protein
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1wf0 chain A
2cqg chain A
2n2c chain A
2n3x chain A
2n4g chain A
2n4h chain A
2n4p chain A
4bs2 chain A
4iuf chain A
4y00 chain A
4y00 chain B
4y00 chain C
4y00 chain D
4y0f chain A
4y0f chain B
5mdi chain A
5mdi chain B
5mrg chain A
5w50 chain A
5w50 chain B
5w52 chain A
5w7v chain 0
5w7v chain 1
5w7v chain 2
5w7v chain 3
5w7v chain 4
5w7v chain 5
5w7v chain 6
5w7v chain 7
5w7v chain 8
5whn chain A
5whp chain A
5wia chain A
5wiq chain A
5wiq chain B
5wkb chain A
5wkd chain A
5x4f chain A
6b1g chain A
6b1g chain B
6cf4 chain A
6cfh chain A
6cfh chain B
6n37 chain A
6n37 chain B
6n37 chain C
6n37 chain D
6n37 chain E
6n37 chain F
6n37 chain G
6n37 chain H
6n37 chain I
6n37 chain J
6n3a chain A
6n3a chain B
6n3a chain C
6n3a chain D
6n3a chain E
6n3a chain F
6n3a chain G
6n3a chain H
6n3a chain I
6n3a chain J
6n3a chain K
6n3a chain L
6n3a chain M
6n3a chain N
6n3a chain O
6n3a chain P
6n3a chain Q
6n3a chain R
6n3a chain S
6n3a chain T
6n3b chain A
6n3b chain B
6n3b chain C
6n3b chain D
6n3b chain E
6n3b chain F
6n3b chain G
6n3b chain H
6n3b chain I
6n3b chain J
6n3c chain A
6n3c chain B
6n3c chain C
6n3c chain D
6n3c chain E
6n3c chain F
6n3c chain G
6n3c chain H
6n3c chain I
6n3c chain J
6n3c chain K
6n3c chain L
6n3c chain M
6n3c chain N
6n3c chain O
6n3c chain P
6n3c chain Q
6n3c chain R
6n3c chain S
6n3c chain T
6t4b chain A
6t4b chain C
6t4b chain E
6t4b chain G
6t4b chain I
7kwz chain A
7kwz chain B
7kwz chain C
7kwz chain D
7kwz chain E
7n9h chain A
7py2 chain A
7py2 chain B
7py2 chain C
7py2 chain D
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S273 SNRQLERS GRFGGNP 1 43 43 - - - - - - - - - - - - - - - - - - - S292 NQGGFGNS RGGGAGL 10 1284 106 - 103 80 18 26 91 - 73 41 103 94 110 101 75 17 101 43 84 18 S375 GSGNNSYS GSNSGAA 1 9 - - - - - - - - - - - - - - - - - - - 9 S377 GNNSYSGS NSGAAIG 1 8 - - - - - - - - - - - - - - - - - - 6 2 S379 NSYSGSNS GAAIGWG 1 15 - - - - - - - - - - - - - - - - - - 11 4 S389 AIGWGSAS NAGSGSG 1 19 - - - - - - - - 13 6 - - - - - - - - - - S395 ASNAGSGS GFNGGFG 1 9 - - - - - - - - - - - - - - - - - - 7 2 S403 GFNGGFGS SMDSKSS 1 14 - - - - - - - - - - 6 8 - - - - - - - - S404 FNGGFGSS MDSKSSG 6 301 14 - - - - - 99 - 31 15 48 44 13 13 - - - - 11 13
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S273 SNRQLERS GRFGGNP - - - - - - - - - - - S292 NQGGFGNS RGGGAGL -7.4e-14 - 1.4e-8 - - -0.79 -6.5e-28 -1.4e-21 -0.01 -0.001 0.25 S375 GSGNNSYS GSNSGAA - - - - - - - - - - - S377 GNNSYSGS NSGAAIG - - - - - - - - - - - S379 NSYSGSNS GAAIGWG - - - - - - - - - - - S389 AIGWGSAS NAGSGSG - - - - - - - - - - - S395 ASNAGSGS GFNGGFG - - - - - - - - - - - S403 GFNGGFGS SMDSKSS - - - - - - - - - - - S404 FNGGFGSS MDSKSSG -2.2e-11 - - - - -0.028 -3.7e-13 - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S273
S292
S375
S377
S379
S389
S395
S403
S404
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation CCRCC S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation COAD S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation GBM S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation HNSCC S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation LSCC S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation LUAD S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation OV S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation PDAC S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation UCEC S273 S292 S377 S379 S389 S395 S403 S404 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S273
S292
S375
S377
S379
S389
S395
S403
S404
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S273
S292
S375
S377
S379
S389
S395
S403
S404
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.