SNRPA: small nuclear ribonucleoprotein polypeptide A
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1aud chain A
1drz chain A
1dz5 chain A
1dz5 chain B
1fht chain A
1m5k chain C
1m5k chain F
1m5o chain C
1m5o chain F
1m5p chain C
1m5p chain F
1m5v chain C
1m5v chain F
1nu4 chain A
1nu4 chain B
1oia chain A
1oia chain B
1sj3 chain P
1sj4 chain P
1sjf chain A
1u6b chain A
1urn chain A
1urn chain B
1urn chain C
1vbx chain A
1vby chain A
1vbz chain A
1vc0 chain A
1vc5 chain A
1vc6 chain A
1zzn chain A
2a3j chain A
2nz4 chain A
2nz4 chain B
2nz4 chain C
2nz4 chain D
2oih chain A
2oj3 chain A
2u1a chain A
3bo2 chain A
3bo3 chain A
3bo4 chain A
3cul chain A
3cul chain B
3cun chain A
3cun chain B
3egz chain A
3g8s chain A
3g8s chain B
3g8s chain C
3g8s chain D
3g8t chain A
3g8t chain B
3g8t chain C
3g8t chain D
3g96 chain A
3g96 chain B
3g96 chain C
3g96 chain D
3g9c chain A
3g9c chain B
3g9c chain C
3g9c chain D
3hhn chain B
3hhn chain D
3iin chain A
3irw chain P
3iwn chain C
3iwn chain D
3k0j chain A
3k0j chain B
3k0j chain C
3k0j chain D
3l3c chain A
3l3c chain B
3l3c chain C
3l3c chain D
3mum chain P
3mur chain P
3mut chain P
3muv chain P
3mxh chain P
3p49 chain B
3pgw chain A
3pgw chain P
3r1h chain A
3r1h chain D
3r1l chain A
3r1l chain D
3ucu chain P
3ucz chain P
3ud3 chain P
3ud4 chain P
4c4w chain A
4c4w chain B
4c4w chain E
4c4w chain F
4pr6 chain A
4prf chain A
4w90 chain B
4w92 chain B
4yb1 chain P
5ddo chain C
5ddo chain G
5ddp chain C
5ddp chain D
5ddq chain C
5ddq chain D
5ddr chain C
5ddr chain D
5fj4 chain A
5fj4 chain B
5fj4 chain E
5fj4 chain F
6las chain C
6las chain D
6las chain E
6lau chain C
6lau chain D
6lau chain E
6lax chain C
6lax chain D
6lax chain E
6laz chain C
6laz chain D
6laz chain E
6qx9 chain 1A
6sqn chain A
6sqn chain B
6sqn chain C
6sqq chain AAA
6sqq chain BBB
6sqq chain CCC
6sqt chain AAA
6sqt chain BBB
6sqt chain CCC
6sqv chain AAA
6sqv chain BBB
6sqv chain CCC
6sqv chain DDD
6sr7 chain AAA
6sr7 chain BBB
6sr7 chain CCC
6sr7 chain DDD
6xh0 chain A
6xh1 chain A
6xh2 chain A
6xh3 chain A
7aep chain A
7b0y chain c
7d7v chain C
7dlz chain A
7dlz chain B
7dlz chain C
7dlz chain D
7dwh chain A
7dwh chain B
7dwh chain C
7dwh chain D
7lhx chain A
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S115 REKRKPKS QETPATK 8 592 14 - - - - - 90 - 27 16 64 60 71 64 21 4 40 14 89 18 T118 RKPKSQET PATKKAV 1 9 - - - - - - - - - - - - - - - - - - - 9 T131 AVQGGGAT PVVGAVQ 10 1264 114 - 91 68 32 22 64 - 102 59 108 99 110 101 27 5 105 44 95 18
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S115 REKRKPKS QETPATK 1.6e-4 - - - - -0.95 3.5e-9 8.7e-3 - 3.5e-3 -3.2e-3 T118 RKPKSQET PATKKAV - - - - - - - - - - - T131 AVQGGGAT PVVGAVQ -0.96 - 0.027 -0.97 - -0.045 0.26 -0.31 - -3.2e-7 2.6e-6
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S115
T118
T131
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S115 T131 protein RNA SCNV methylation CCRCC S115 T131 protein RNA SCNV methylation COAD S115 T131 protein RNA SCNV methylation GBM S115 T131 protein RNA SCNV methylation HNSCC S115 T131 protein RNA SCNV methylation LSCC S115 T131 protein RNA SCNV methylation LUAD S115 T131 protein RNA SCNV methylation OV S115 T131 protein RNA SCNV methylation PDAC S115 T131 protein RNA SCNV methylation UCEC S115 T131 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S115
T118
T131
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S115
T118
T131
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.