RPS29: ribosomal protein S29
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
4ug0 chain Sd
4v6x chain Ad
5a2q chain d
5aj0 chain Bd
5flx chain d
5lks chain Sd
5oa3 chain d
5t2c chain AG
5vyc chain d1
5vyc chain d2
5vyc chain d3
5vyc chain d4
5vyc chain d5
5vyc chain d6
6fec chain J
6g51 chain d
6g53 chain d
6g5h chain d
6g5i chain d
6ip5 chain 3E
6ip6 chain 3E
6ip8 chain 3E
6ole chain Sd
6olf chain Sd
6olg chain Bd
6oli chain Sd
6olz chain Bd
6om0 chain Sd
6om7 chain Sd
6qzp chain Sd
6xa1 chain Sd
6y0g chain Sd
6y2l chain Sd
6y57 chain Sd
6ybs chain i
6z6l chain Sd
6z6m chain Sd
6z6n chain Sd
6zlw chain f
6zm7 chain Sd
6zme chain Sd
6zmi chain Sd
6zmo chain Sd
6zmt chain f
6zmw chain i
6zn5 chain f
6zoj chain d
6zol chain d
6zon chain l
6zp4 chain l
6zuo chain d
6zv6 chain d
6zvh chain d
6zvj chain l
6zxd chain d
6zxe chain d
6zxf chain d
6zxg chain d
6zxh chain d
7a09 chain l
7k5i chain d
7qp6 chain i
7qp7 chain i
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
Y7 _MGHQQLY WSHPRKF 6 99 44 - 8 8 - - - - 12 6 4 4 4 4 - - 3 2 - - S9 GHQQLYWS HPRKFGQ 6 253 - - 7 7 50 48 55 - - - - - - - 14 2 28 11 26 5
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Y7 _MGHQQLY WSHPRKF - - - - - - - - - - - S9 GHQQLYWS HPRKFGQ -8.3e-3 - - -0.37 - - - - - -4.5e-3 -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
Y7
S9
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA Y7 S9 protein RNA SCNV methylation CCRCC Y7 S9 protein RNA SCNV methylation COAD Y7 S9 protein RNA SCNV methylation GBM Y7 S9 protein RNA SCNV methylation HNSCC Y7 S9 protein RNA SCNV methylation LSCC Y7 S9 protein RNA SCNV methylation LUAD Y7 S9 protein RNA SCNV methylation OV Y7 S9 protein RNA SCNV methylation PDAC Y7 S9 protein RNA SCNV methylation UCEC Y7 S9 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
Y7
S9
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
Y7
S9
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.