CAPNS1: calpain small subunit 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1kfu chain S
1kfx chain S
4phj chain A
4phj chain B
4phk chain A
4phk chain B
4phm chain A
4phm chain B
4wq2 chain A
4wq2 chain B
4wq3 chain A
4wq3 chain B
5d69 chain A
5d69 chain B
6qlb chain A
6qlb chain B
6qlb chain C
6qlb chain D
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S67 RILGGVIS AISEAAA 8 470 - - 52 49 - - 55 - 103 59 4 5 62 55 1 1 13 5 6 - S70 GGVISAIS EAAAQYN 5 122 - - 21 12 3 6 27 - - - 19 18 8 8 - - - - - - S88 PPPRTHYS NIEANES 5 202 - - 17 14 - - - - - - 30 26 32 28 29 5 - - 12 9
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S67 RILGGVIS AISEAAA -6.3e-3 - 0.012 - - -3.0e-5 - -2.2e-3 - - - S70 GGVISAIS EAAAQYN 0.36 - 0.36 - - - - - - - - S88 PPPRTHYS NIEANES -3.4e-3 - - - - - -0.37 -1.1e-3 - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S67
S70
S88
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S67 S70 S88 protein RNA SCNV methylation CCRCC S67 S70 S88 protein RNA SCNV methylation COAD S67 S70 S88 protein RNA SCNV methylation GBM S67 S70 S88 protein RNA SCNV methylation HNSCC S67 S70 S88 protein RNA SCNV methylation LSCC S67 S70 S88 protein RNA SCNV methylation LUAD S67 S70 S88 protein RNA SCNV methylation OV S67 S70 S88 protein RNA SCNV methylation PDAC S67 S70 S88 protein RNA SCNV methylation UCEC S67 S70 S88 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S67
S70
S88
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S67
S70
S88
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.