TUBGCP6: tubulin gamma complex associated protein 6
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
6m33 chain A
6v6c chain L
6v6s chain L
6x0u chain D
7as4 chain 4
7as4 chain L
7qj0 chain L
7qj1 chain L
7qj2 chain L
7qj3 chain L
7qj4 chain L
7qj5 chain L
7qj5 chain c
7qj6 chain L
7qj6 chain c
7qj7 chain L
7qj7 chain c
7qj8 chain L
7qj8 chain c
7qj9 chain L
7qj9 chain c
7qja chain L
7qja chain c
7qjb chain L
7qjb chain c
7qjc chain L
7qjc chain c
7qjd chain L
7qjd chain c
7qje chain L
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S1030 ERLFGQVS GGGLPTG 2 17 - - 4 4 - - - - - - - - 5 4 - - - - - - S1057 WNTHGHVS DASIRVG 4 102 8 - 4 4 - - 36 - - - - - 26 24 - - - - - - S1122 IRVGENVS DVAPTRP 1 8 - - - - - - - - - - - - 4 4 - - - - - - S1141 HGHVSNAS IRVGENV 1 9 - - - - - - 9 - - - - - - - - - - - - - S1219 WNTHGHVS DTSIRVG 1 8 - - - - - - - - - - - - 4 4 - - - - - - S1237 SDVAPIRS RCNTHGH 1 24 - - - - - - - - - - - - - - - - - - 17 7
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S1030 ERLFGQVS GGGLPTG - - - - - - - - - - - S1057 WNTHGHVS DASIRVG 0.17 - - - - - - 0.17 - - - S1122 IRVGENVS DVAPTRP - - - - - - - - - - - S1141 HGHVSNAS IRVGENV - - - - - - - - - - - S1219 WNTHGHVS DTSIRVG - - - - - - - - - - - S1237 SDVAPIRS RCNTHGH - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S1030
S1057
S1122
S1141
S1219
S1237
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation CCRCC S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation COAD S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation GBM S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation HNSCC S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation LSCC S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation LUAD S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation OV S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation PDAC S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation UCEC S1030 S1057 S1122 S1141 S1219 S1237 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S1030
S1057
S1122
S1141
S1219
S1237
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S1030
S1057
S1122
S1141
S1219
S1237
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.