Protein: ENSP00000253363
Gene: RBM39

LinkedOmicsKB © 2022-2023 Zhang Lab

RBM39:
RNA binding motif protein 39

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S24KDENKLSSANGHEER515626-------221254--4911--27-
S32ANGHEERSKKRKKSK13333-------------------
Y95DRRFRGRYRSPYSGP9297--124261927-641010232049111034518
S97RFRGRYRSPYSGPKF101553122-103809710099-10862108991101018319105449518
Y99RGRYRSPYSGPKFNS217--44--------54------
S100GRYRSPYSGPKFNSA8318--44363654-3019--1916206451811-
S117GKIGLPHSIKLSRRR101385122-9876494999-1025910394110101571299429518
S121LPHSIKLSRRRSRSK741570-6347----291553491312--371512-
S125IKLSRRRSRSKSPFR384----2735----------54112
S127LSRRRSRSKSPFRKD5309----505745---2521----4820412
Showing 1 to 10 of 20 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S24KDENKLSSANGHEER1.2e-6----5.2e-3--4.8e-5--
S32ANGHEERSKKRKKSK-----------
Y95DRRFRGRYRSPYSGP2.9e-10--1.8e-4---9.3e-63.2e-3-0.14
S97RFRGRYRSPYSGPKF4.5e-18-7.1e-31.2e-19-1.2e-42.2e-82.7e-96.2e-7-2e-13-0.79
Y99RGRYRSPYSGPKFNS-----------
S100GRYRSPYSGPKFNSA-0.001--0.37--0.031----9.2e-6-
S117GKIGLPHSIKLSRRR1.5e-14--0.880.043-2.6e-82.1e-193.9e-160.15-0.085-0.01
S121LPHSIKLSRRRSRSK2e-8-1.9e-7--0.224.6e-11---0.072-
S125IKLSRRRSRSKSPFR4.8e-8--4.8e-8-------
S127LSRRRSRSKSPFRKD2.5e-13--3.3e-11--7.5e-7--0.28-
Showing 1 to 10 of 20 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationCCRCCS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationCOADS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationGBMS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationHNSCCS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationLSCCS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationLUADS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationOVS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationPDACS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylationUCECS24S32Y95S97Y99S100S117S121S125S127S129S136T146S190S246S334S336S337S341T354proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.