VHL: von Hippel-Lindau tumor suppressor
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1lm8 chain V
1lqb chain C
1vcb chain C
1vcb chain F
1vcb chain I
1vcb chain L
3zrc chain C
3zrc chain F
3zrc chain I
3zrc chain L
3zrf chain C
3zrf chain F
3zrf chain I
3zrf chain L
3ztc chain C
3ztc chain F
3ztc chain I
3ztc chain L
3ztd chain C
3ztd chain F
3ztd chain I
3ztd chain L
3zun chain C
3zun chain F
3zun chain I
3zun chain L
4ajy chain V
4awj chain C
4awj chain F
4awj chain I
4awj chain L
4b95 chain C
4b95 chain F
4b95 chain I
4b95 chain L
4b9k chain C
4b9k chain F
4b9k chain I
4b9k chain L
4bks chain C
4bks chain F
4bks chain I
4bks chain L
4bkt chain C
4bkt chain F
4bkt chain I
4bkt chain L
4w9c chain C
4w9c chain F
4w9c chain I
4w9c chain L
4w9d chain C
4w9d chain F
4w9d chain I
4w9d chain L
4w9e chain C
4w9e chain F
4w9e chain I
4w9e chain L
4w9f chain C
4w9f chain F
4w9f chain I
4w9f chain L
4w9g chain C
4w9g chain F
4w9g chain I
4w9g chain L
4w9h chain C
4w9h chain F
4w9h chain I
4w9h chain L
4w9i chain C
4w9i chain F
4w9i chain I
4w9i chain L
4w9j chain C
4w9j chain F
4w9j chain I
4w9j chain L
4w9k chain C
4w9k chain F
4w9k chain I
4w9k chain L
4w9l chain C
4w9l chain F
4w9l chain I
4w9l chain L
4wqo chain A
5lli chain C
5lli chain F
5lli chain I
5lli chain L
5n4w chain V
5nvv chain C
5nvv chain F
5nvv chain I
5nvv chain L
5nvw chain C
5nvw chain F
5nvw chain I
5nvw chain L
5nvx chain C
5nvx chain F
5nvx chain I
5nvx chain L
5nvy chain C
5nvy chain F
5nvy chain I
5nvy chain L
5nvz chain C
5nvz chain F
5nvz chain I
5nvz chain L
5nw0 chain C
5nw0 chain F
5nw0 chain I
5nw0 chain L
5nw1 chain C
5nw1 chain F
5nw1 chain I
5nw1 chain L
5nw2 chain C
5nw2 chain F
5nw2 chain I
5nw2 chain L
5t35 chain D
5t35 chain H
6bvb chain V
6fmi chain C
6fmi chain F
6fmj chain C
6fmj chain F
6fmj chain I
6fmj chain L
6fmk chain C
6fmk chain F
6fmk chain I
6fmk chain L
6gfx chain C
6gfy chain C
6gfy chain F
6gfy chain I
6gfy chain L
6gfz chain C
6gfz chain F
6gfz chain I
6gfz chain L
6gmn chain C
6gmn chain F
6gmn chain I
6gmn chain L
6gmq chain C
6gmq chain F
6gmq chain I
6gmq chain L
6gmr chain V
6gmx chain C
6gmx chain F
6gmx chain I
6gmx chain L
6hax chain B
6hax chain F
6hay chain B
6hay chain F
6hr2 chain B
6hr2 chain F
6i7q chain V
6i7r chain V
6r6h chain V
6r7f chain V
6sis chain D
6sis chain H
6zhc chain AAA
7cjb chain A
7cjb chain E
7cjb chain I
7cjb chain M
7jto chain L
7jtp chain L
7khh chain C
7pi4 chain AAA
7q2j chain C
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S68 PVLRSVNS REPSQVI 8 202 34 - 13 12 - - 17 - 29 17 - - 19 16 14 2 14 6 7 2 S80 QVIFCNRS PRVVLPV 1 7 - - - - - - - - - - - - - - - - - - 7 -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S68 PVLRSVNS REPSQVI -0.26 - - - - -0.26 - - - - - S80 QVIFCNRS PRVVLPV - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S68
S80
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S68 S80 protein RNA SCNV methylation CCRCC S68 S80 protein RNA SCNV methylation COAD S68 S80 protein RNA SCNV methylation GBM S68 S80 protein RNA SCNV methylation HNSCC S68 S80 protein RNA SCNV methylation LSCC S68 S80 protein RNA SCNV methylation LUAD S68 S80 protein RNA SCNV methylation OV S68 S80 protein RNA SCNV methylation PDAC S68 S80 protein RNA SCNV methylation UCEC S68 S80 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S68
S80
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S68
S80
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.