PUM1: pumilio RNA binding family member 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1ib2 chain A
1m8w chain A
1m8w chain B
1m8x chain A
1m8x chain B
1m8y chain A
1m8y chain B
1m8z chain A
2yjy chain A
2yjy chain B
3bsb chain A
3bsb chain B
3bsx chain A
3bsx chain B
3q0l chain A
3q0l chain B
3q0m chain A
3q0m chain B
3q0n chain A
3q0n chain B
3q0o chain A
3q0o chain B
3q0p chain A
3q0p chain B
5ykh chain A
5yki chain A
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S17 KAVLWQDS FSPHLKH 1 8 - - - - - - - - - - - - 5 3 - - - - - - S19 VLWQDSFS PHLKHHP 3 86 23 - - - - - - - - - 29 26 4 4 - - - - - - S75 SIGVAGRS QDDAMVD 8 220 9 - 4 4 - - 9 - 10 7 15 14 38 33 12 - - - 47 18 S98 EQLGGGGS GGGGYNN 10 643 104 - 24 22 22 14 72 - 11 6 75 68 63 55 28 4 5 1 51 18 Y103 GGSGGGGY NNSKHRW 1 6 - - - - - - - - - - - - - - - - - - 6 - S106 GGGGYNNS KHRWPTG 2 41 - - - - - - 35 - - - - - - - - - - - 6 - T112 NSKHRWPT GDNIHAE 9 1010 113 - 65 45 6 3 99 - 108 62 108 99 96 88 7 2 78 31 - - S124 HAEHQVRS MDELNHD 10 1460 114 - 99 76 83 87 99 - 108 62 108 99 110 101 68 17 89 38 84 18 S185 GTSDHSVS QPIMVQR 4 68 9 - - - - - 27 - - - - - - - 15 2 - - 13 2 S197 VQRRPGQS FHVNSEV 2 22 - - - - - - - - 6 3 - - - - - - 9 4 - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S17 KAVLWQDS FSPHLKH - - - - - - - - - - - S19 VLWQDSFS PHLKHHP 1.0e-4 - - - - - 1.0e-4 - - - - S75 SIGVAGRS QDDAMVD -0.004 - - - - - - -8.1e-3 - - -0.15 S98 EQLGGGGS GGGGYNN 0.05 - 0.06 0.13 - - -0.028 0.031 - - 0.31 Y103 GGSGGGGY NNSKHRW - - - - - - - - - - - S106 GGGGYNNS KHRWPTG - - - - - - - - - - - T112 NSKHRWPT GDNIHAE 1e-51 - 4.6e-9 - - 3.3e-5 5.6e-19 1.6e-18 - 8.5e-10 - S124 HAEHQVRS MDELNHD 3.5e-22 - 1.7e-5 0.59 - -0.54 3e-13 2e-15 -0.35 8e-8 5.0e-4 S185 GTSDHSVS QPIMVQR - - - - - - - - - - - S197 VQRRPGQS FHVNSEV - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S17
S19
S75
S98
Y103
S106
T112
S124
S185
S197
S209
S212
S214
Y224
S227
S228
S229
S247
T260
T298
S305
S709
T711
S713
S714
S797
S799
S800
S802
S803
S806
S809
S813
S814
T1150
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation CCRCC S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation COAD S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation GBM S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation HNSCC S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation LSCC S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation LUAD S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation OV S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation PDAC S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation UCEC S17 S19 S75 S98 Y103 S106 T112 S124 S185 S197 S209 S212 S214 Y224 S227 S228 S229 S247 T260 T298 S305 S709 T711 S713 S714 S797 S799 S800 S802 S803 S806 S809 S813 S814 T1150 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S17
S19
S75
S98
Y103
S106
T112
S124
S185
S197
S209
S212
S214
Y224
S227
S228
S229
S247
T260
T298
S305
S709
T711
S713
S714
S797
S799
S800
S802
S803
S806
S809
S813
S814
T1150
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S17
S19
S75
S98
Y103
S106
T112
S124
S185
S197
S209
S212
S214
Y224
S227
S228
S229
S247
T260
T298
S305
S709
T711
S713
S714
S797
S799
S800
S802
S803
S806
S809
S813
S814
T1150
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.