Protein: ENSP00000261369
Gene: SNX24

LinkedOmicsKB © 2022-2023 Zhang Lab

SNX24:
sorting nexin 24

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S113PSLPKAESCGSFDET92317-28115437-1610201844--20102215
S116PKAESCGSFDETESE108649-1312707363-885049462524751896409518
T120SCGSFDETESEESSK3599-98--------1716------
S122GSFDETESEESSKLS58518-54------981716----62
S125DETESEESSKLSHQP327------9---55------62
Showing 1 to 5 of 5 rows

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S113PSLPKAESCGSFDET-0.95--6.8e-5---3.2e-3---0.650.17
S116PKAESCGSFDETESE-2.3e-5---3.1e-3--6.6e-3-1.3e-5-0.44-0.29-0.960.47
T120SCGSFDETESEESSK-----------
S122GSFDETESEESSKLS-----------
S125DETESEESSKLSHQP-----------
Showing 1 to 5 of 5 rows

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
xcell: MacrophageS1162.6e-6-0.150.0370.336.1e-30.610.09-0.680.0541.7e-3
xcell: Macrophage M1S1163.5e-6-0.20.0520.210.0110.520.07-0.450.0370.002
KINASE-PSP_CK2A1/CSNK2A1S1168.6e-5-0.38-0.950.69-0.570.120.31-0.96.8e-72.0e-4
xcell: Macrophage M2S1161.1e-4-0.490.620.416.1e-30.640.0140.310.0420.38
PROGENy: EGFRS1161.6e-4-0.917.1e-40.690.020.8-0.430.378.9e-30.036
HALLMARK_INFLAMMATORY_RESPONSES1163.1e-4-0.683.2e-30.412.2e-3-0.470.52-0.610.0250.053
HALLMARK_INTERFERON_GAMMA_RESPONSES1167.2e-4-0.310.0070.450.064-0.460.32-0.450.0360.026
HALLMARK_IL2_STAT5_SIGNALINGS1167.9e-4-0.520.0140.320.039-0.430.86-0.630.0226.7e-3
SBS10a (POLE mutation)S1168.8e-4--0.15----0.13-5.3e-3
SBS15 (defective DNA mismatch repair)S1160.001--5.4e-3-0.170.4--0.340.17
Showing 1 to 10 of 1290 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS113S116T120S122S125proteinRNASCNVmethylationCCRCCS113S116T120S122S125proteinRNASCNVmethylationCOADS113S116T120S122S125proteinRNASCNVmethylationGBMS113S116T120S122S125proteinRNASCNVmethylationHNSCCS113S116T120S122S125proteinRNASCNVmethylationLSCCS113S116T120S122S125proteinRNASCNVmethylationLUADS113S116T120S122S125proteinRNASCNVmethylationOVS113S116T120S122S125proteinRNASCNVmethylationPDACS113S116T120S122S125proteinRNASCNVmethylationUCECS113S116T120S122S125proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.