Protein: ENSP00000265560
Gene: USP4

LinkedOmicsKB © 2022-2023 Zhang Lab

USP4:
ubiquitin specific peptidase 4

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S244PSRNFTTSPKSSASP98046---959399-5834151315128319105449518
S592RERKSRPSSTSSASA18------------44------
S642LPDEFGSSPLEPGAC4618-----17---54------225
S652EPGACNGSRNSCEGE18------------------62
S655ACNGSRNSCEGEDEE910026-6349--27-1086210394102935414100436618
S675EEGKEQLSETEGSGE103308-161534299-45284945981524212-
T677GKEQLSETEGSGEDE943795-445462-10862151344--83406
S680QLSETEGSGEDEPGN101440121-10380847799-1086210899110101277105449015
S934FYKTPSLSSSGSSDG229----------1010------72
S938PSLSSSGSSDGGTRP16------------------6-
Showing 1 to 10 of 13 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S244PSRNFTTSPKSSASP8.3e-5--1.2e-12-0.086---0.210.074-0.57
S592RERKSRPSSTSSASA-----------
S642LPDEFGSSPLEPGAC-----------
S652EPGACNGSRNSCEGE-----------
S655ACNGSRNSCEGEDEE-0.29--5.8e-6---1.2e-30.664.8e-90.063-7.7e-3-0.59
S675EEGKEQLSETEGSGE0.037--0.097--0.590.013----
T677GKEQLSETEGSGEDE-2.2e-3-----2.2e-3-----
S680QLSETEGSGEDEPGN1.3e-23--3.7e-170.015-1.6e-71.2e-163.2e-19-2.1e-106.3e-4
S934FYKTPSLSSSGSSDG-----------
S938PSLSSSGSSDGGTRP-----------
Showing 1 to 10 of 13 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationCCRCCS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationCOADS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationGBMS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationHNSCCS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationLSCCS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationLUADS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationOVS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationPDACS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylationUCECS244S592S642S652S655S675T677S680S934S938S947S948S959proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.