Protein: ENSP00000272163
Gene: LBR

LinkedOmicsKB © 2022-2023 Zhang Lab

LBR:
lamin B receptor

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T58ENDIKPLTSFRQRKG229--1110------------53--
S59NDIKPLTSFRQRKGG8638--1310666962-52898269643674420--
S67FRQRKGGSTSSSPSR7261----6390---25231311285523515
S69QRKGGSTSSSPSRRR213------8---------41--
S70RKGGSTSSSPSRRRG23815---------------158--
S71KGGSTSSSPSRRRGS82488---11755---3530139338751611
S84GSRSRSRSRSPGRPP875978-889710090-5732558981----9118
S86RSRSRSRSPGRPPKS10131486-75619710090-55341039580748319105449518
S97PPKSARRSASASHQA1076640-5450728099-76432019141276181895016
S99KSARRSASASHQADI107429-124908999-17815133532761880329518
Showing 1 to 10 of 19 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T58ENDIKPLTSFRQRKG-----------
S59NDIKPLTSFRQRKGG-0.41---1.5e-8--0.137.5e-4-0.015-
S67FRQRKGGSTSSSPSR-4.7e-3-----0.92----4.1e-5
S69QRKGGSTSSSPSRRR-----------
S70RKGGSTSSSPSRRRG-----------
S71KGGSTSSSPSRRRGS-0.78------0.78----
S84GSRSRSRSRSPGRPP8.2e-7--0.95-0.076-2.4e-7--4.2e-3
S86RSRSRSRSPGRPPKS0.97--0.31.8e-3--0.0370.720.240.024-0.32-0.004
S97PPKSARRSASASHQA-2.1e-4-1.3e-10-2.9e-16--0.79-3.9e-3--0.016--0.076
S99KSARRSASASHQADI0.91--0.1---2.1e-10-0.42-6.9e-3-2.3e-6
Showing 1 to 10 of 19 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationCCRCCT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationCOADT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationGBMT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationHNSCCT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationLSCCT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationLUADT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationOVT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationPDACT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylationUCECT58S59S67S69S70S71S84S86S97S99S101T118S128S156S167S182T200S357S516proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.