Protein: ENSP00000284767
Gene: PDLIM3

LinkedOmicsKB © 2022-2023 Zhang Lab

PDLIM3:
PDZ and LIM domain 3

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S18APWGFRLSGGIDFNQ8765--26229197--402334326660821656267618
S89RGETHLWSPQVSEDG101535122-103809710099-1086210899105977518105449518
S93HLWSPQVSEDGKAHP101474112-8268929699-10862103951101016717105449518
S107PFKINLESEPQDGNY274----45--4223----------
Y114SEPQDGNYFEHKHNI19----45--------------
S132PFVIPGRSSGCSTPS113--------85----------
S133FVIPGRSSGCSTPSG41878-------9757108--61----
S136PGRSSGCSTPSGIDC2188-------64----------
T137GRSSGCSTPSGIDCG31107-------3020----4112----
S139SSGCSTPSGIDCGSG16--------33----------
Showing 1 to 10 of 21 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S18APWGFRLSGGIDFNQ-2.3e-17-0.033-3.3e-23--5.8e-7-2.1e-6-2.7e-18-0.0240.010.048
S89RGETHLWSPQVSEDG-7.8e-23--0.035-3e-19--0.006-8.6e-23-1.6e-16-0.420.0130.016
S93HLWSPQVSEDGKAHP5.4e-7--0.19-1.2e-3--0.690.0113.0e-60.881.1e-131.5e-5
S107PFKINLESEPQDGNY-0.43-----0.43-----
Y114SEPQDGNYFEHKHNI-----------
S132PFVIPGRSSGCSTPS-----------
S133FVIPGRSSGCSTPSG-2.8e-4-----2.8e-4-----
S136PGRSSGCSTPSGIDC-----------
T137GRSSGCSTPSGIDCG-2.9e-3-----0.025---0.048--
S139SSGCSTPSGIDCGSG-----------
Showing 1 to 10 of 21 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationCCRCCS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationCOADS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationGBMS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationHNSCCS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationLSCCS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationLUADS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationOVS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationPDACS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylationUCECS18S89S93S107Y114S132S133S136T137S139S145S148T149S154T155S250S252S264S273S285Y355proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.