Protein: ENSP00000286835
Gene: SCAF4

LinkedOmicsKB © 2022-2023 Zhang Lab

SCAF4:
SR-related CTD associated factor 4

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T138LLDMAAGTSNAAPVA599--241527--181154----94--
S139LDMAAGTSNAAPVAE568--171645--63--44-----9
T149APVAENVTNNEGSPP79115-9845--136--89--734-
S154NVTNNEGSPPPPVKV10134870-82609710099-95577367105967213105449518
S216QQPPKPQSPALDNAV19--------63----------
T237ITAQLKTTPTQPSEQ101232116-3332918899-875069647874831996409518
S429QEVKRHMSDNRKSRS5109------9---1513441433314--
S434HMSDNRKSRSRSASR177-------------------
S650QNGGAETSHTEPVSP129--209----------------
T652GGAETSHTEPVSPIP55517-88--------44--32-9
Showing 1 to 10 of 16 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T138LLDMAAGTSNAAPVA-0.28--0.28--------
S139LDMAAGTSNAAPVAE-----------
T149APVAENVTNNEGSPP-----------
S154NVTNNEGSPPPPVKV0.018--7.4e-59.1e-5--5.9e-31.8e-57.4e-4-0.591.3e-6-0.013
S216QQPPKPQSPALDNAV-----------
T237ITAQLKTTPTQPSEQ1.2e-10--2.6e-33.3e-9-1.8e-73.7e-92.7e-200.053-4.2e-7-0.057
S429QEVKRHMSDNRKSRS-0.009---------0.009-
S434HMSDNRKSRSRSASR-----------
S650QNGGAETSHTEPVSP-----------
T652GGAETSHTEPVSPIP-----------
Showing 1 to 10 of 16 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationCCRCCT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationCOADT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationGBMT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationHNSCCT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationLSCCT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationLUADT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationOVT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationPDACT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylationUCECT138S139T149S154S216T237S429S434S650T652S656S1004S1037S1131S1132S1141proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.