NPM1:
nucleophosmin 1

Lollipop plot

Phosphosites location and occurrence

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Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S4____MEDSMDMDMSP105299-67556337-61362524403714144183616
S10DSMDMDMSPLRPQNY57713-------64--45245--511
S43DENEHQLSLRTVSLG474--44------55--287--21-
S48QLSLRTVSLGAGAKD6145--1111----545454--166677
Y67VEAEAMNYEGSPIKV10903122-9572639-71439480968847122182511
S70EAMNYEGSPIKVTLA101343113-3030918999-7245108981101008319101429518
S82TLATLKMSVQPTVSL225------------99----52
S88MSVQPTVSLGGFEIT10111083-10380636228-8650837711010159124116479
T95SLGGFEITPPVVLRL5141--------2818542624235--62
S106VLRLKCGSGPVHISG61239-------6354--621010572
Showing 1 to 10 of 31 rows
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Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S4____MEDSMDMDMSP4.8e-8-3.1e-8--0.880.240.7-8.2e-50.029
S10DSMDMDMSPLRPQNY-----------
S43DENEHQLSLRTVSLG-----------
S48QLSLRTVSLGAGAKD-----------
Y67VEAEAMNYEGSPIKV9e-22-1.4e-7--0.24.6e-233.5e-16-0.62--0.54
S70EAMNYEGSPIKVTLA3.1e-28-0.0331.2e-5-0.536.6e-294.2e-190.950.260.006
S82TLATLKMSVQPTVSL-----------
S88MSVQPTVSLGGFEIT-1.6e-10--1.4e-13-0.49--2.0e-5-0.62-1.7e-3-0.66-0.6-
T95SLGGFEITPPVVLRL-0.1-----0.031--0.89---
S106VLRLKCGSGPVHISG0.13-------0.13--
Showing 1 to 10 of 31 rows
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* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationCCRCCS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationCOADS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationGBMS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationHNSCCS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationLSCCS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationLUADS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationOVS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationPDACS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylationUCECS4S10S43S48Y67S70S82S88T95S106S112S125S137S139S143S149S195T199S207S214S217S218T219S222S227T234T237S242S243S254S260proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.