COL1A2: collagen type I alpha 2 chain
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
5ctd chain B
5cti chain B
5cva chain A
5cva chain D
6jec chain A
6jec chain B
6jec chain C
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T126 EPGEPGQT GPAGARG 2 230 - - - - 64 79 - - - - - - - - 70 17 - - - - T209 GAPGENGT PGQTGAR 4 266 40 - - - 56 60 - - - - - - - - 80 17 8 5 - - T213 ENGTPGQT GARGLPG 1 18 - - - - 8 10 - - - - - - - - - - - - - - S236 GPAGARGS DGSVGPV 2 25 - - - - 2 7 - - - - - - - - 12 4 - - - - S239 GARGSDGS VGPVGPA 2 34 - - - - 10 17 - - - - - - - - 6 1 - - - - S251 GPAGPIGS AGPPGFP 2 67 - - - - 14 22 - - - - - - - - 24 7 - - - - S353 GEPGPAGS KGESGNK 3 155 - - - - 56 52 - - - - - - - - 32 8 4 3 - - S357 PAGSKGES GNKGEPG 2 33 - - - - 9 9 - - - - - - - - 11 4 - - - - S365 GNKGEPGS AGPQGPP 2 33 - - - - 8 10 - - - - - - - - 11 4 - - - - S561 FQGLPGPS GPAGEVG 1 45 - - - - 20 25 - - - - - - - - - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T126 EPGEPGQT GPAGARG -7.4e-12 - - -1.8e-9 - - - - -2.4e-4 - - T209 GAPGENGT PGQTGAR -2.3e-4 - - -0.1 - - - - -3.4e-4 - - T213 ENGTPGQT GARGLPG - - - - - - - - - - - S236 GPAGARGS DGSVGPV - - - - - - - - - - - S239 GARGSDGS VGPVGPA - - - - - - - - - - - S251 GPAGPIGS AGPPGFP - - - - - - - - - - - S353 GEPGPAGS KGESGNK 0.011 - - 0.011 - - - - - - - S357 PAGSKGES GNKGEPG - - - - - - - - - - - S365 GNKGEPGS AGPQGPP - - - - - - - - - - - S561 FQGLPGPS GPAGEVG -0.9 - - -0.9 - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
T126
T209
T213
S236
S239
S251
S353
S357
S365
S561
T632
T690
S801
T831
T854
T860
S878
S984
S999
S1104
Y1108
S1124
S1275
Y1278
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation CCRCC T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation COAD T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation GBM T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation HNSCC T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation LSCC T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation LUAD T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation OV T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation PDAC T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation UCEC T126 T209 T213 S236 S239 S251 S353 S357 S365 S561 T632 T690 S801 T831 T854 T860 S878 S984 S999 S1104 Y1108 S1124 S1275 Y1278 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
T126
T209
T213
S236
S239
S251
S353
S357
S365
S561
T632
T690
S801
T831
T854
T860
S878
S984
S999
S1104
Y1108
S1124
S1275
Y1278
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
T126
T209
T213
S236
S239
S251
S353
S357
S365
S561
T632
T690
S801
T831
T854
T860
S878
S984
S999
S1104
Y1108
S1124
S1275
Y1278
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.