SNRPD1: small nuclear ribonucleoprotein D1 polypeptide
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1b34 chain A
3cw1 chain B
3cw1 chain M
3cw1 chain N
3cw1 chain O
3jcr chain P
3jcr chain p
3pgw chain U
3pgw chain X
4pjo chain C
4pjo chain Q
4pjo chain c
4pjo chain q
4v98 chain AA
4v98 chain AI
4v98 chain AQ
4v98 chain AY
4v98 chain Ag
4v98 chain Ao
4v98 chain Aw
4v98 chain BA
4v98 chain BI
4v98 chain BQ
4v98 chain BY
4v98 chain Bg
4v98 chain Bo
4v98 chain Bw
4v98 chain CA
4v98 chain CI
4v98 chain CQ
4v98 chain CY
4v98 chain Cg
4v98 chain Co
4wzj chain C
4wzj chain CC
4wzj chain CCC
4wzj chain CCCC
4wzj chain J
4wzj chain JJ
4wzj chain JJJ
4wzj chain JJJJ
4wzj chain Q
4wzj chain QQ
4wzj chain QQQ
4wzj chain QQQQ
5mqf chain g
5mqf chain n
5o9z chain Z
5o9z chain g
5o9z chain n
5xjc chain c
5xjc chain j
5xjl chain A
5xjq chain A
5xjr chain A
5xjs chain A
5xjt chain A
5xju chain A
5yzg chain c
5yzg chain j
5z56 chain c
5z56 chain j
5z57 chain c
5z57 chain j
5z58 chain c
5z58 chain j
6ah0 chain V
6ah0 chain g
6ah0 chain j
6ahd chain V
6ahd chain b
6ahd chain j
6ff7 chain g
6ff7 chain n
6icz chain c
6icz chain j
6id0 chain c
6id0 chain j
6id1 chain c
6id1 chain j
6qdv chain h
6qdv chain l
6qw6 chain 41
6qw6 chain 51
6qx9 chain 11
6qx9 chain 21
6qx9 chain 41
6qx9 chain 51
6y53 chain n
6y5q chain n
7a5p chain c
7a5p chain n
7abg chain g
7abg chain n
7abi chain g
7abi chain n
7b0y chain k
7dvq chain c
7dvq chain j
7evo chain g
7w59 chain c
7w59 chain j
7w5a chain c
7w5a chain j
7w5b chain c
7w5b chain j
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S73 RYFILPDS LPLDTLL 3 50 - - 4 4 - - 26 - 11 5 - - - - - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S73 RYFILPDS LPLDTLL - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S73
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S73 protein RNA SCNV methylation CCRCC S73 protein RNA SCNV methylation COAD S73 protein RNA SCNV methylation GBM S73 protein RNA SCNV methylation HNSCC S73 protein RNA SCNV methylation LSCC S73 protein RNA SCNV methylation LUAD S73 protein RNA SCNV methylation OV S73 protein RNA SCNV methylation PDAC S73 protein RNA SCNV methylation UCEC S73 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S73
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S73
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.