COL3A1: collagen type III alpha 1 chain
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
2v53 chain B
2v53 chain C
2v53 chain D
3dmw chain A
3dmw chain B
3dmw chain C
4ae2 chain A
4ae2 chain B
4ae2 chain C
4aej chain A
4aej chain B
4aej chain C
4ak3 chain A
4gyx chain A
4gyx chain B
4gyx chain C
6fzv chain A
6fzv chain B
6fzv chain C
6fzw chain A
6fzw chain B
6fzw chain C
7wwr chain A
7wwr chain B
7wwr chain C
7wws chain A
7wws chain B
7wws chain C
7xan chain A
7xan chain B
7xan chain C
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S134 GQPGSPGS PGPPGIC 1 4 - - - - - - - - - - - - - - - - - - 4 - S143 GPPGICES CPTGPQN 2 47 - - - - 5 4 - - - - - - - - - - - - 33 5 T146 GICESCPT GPQNYSP 1 6 - - - - - - - - - - - - - - - - - - 6 - T278 RNGEKGET GAPGLKG 2 167 - - - - 58 59 - - - - - - - - 41 9 - - - - T340 GPPGPPGT AGFPGSP 7 471 - - 42 32 68 66 - - 42 22 - - 18 16 67 16 44 20 18 - S346 GTAGFPGS PGAKGEV 6 95 - - 9 8 10 17 - - 10 7 - - 4 5 18 4 2 1 - - S391 GPPGINGS PGGKGEM 2 52 - - - - 14 22 - - - - - - - - 13 3 - - - - S469 GEDGKDGS PGEPGAN 2 132 - - - - 52 47 - - - - - - - - 28 5 - - - - S547 GSPGGPGS DGKPGPP 3 123 - - - - 37 35 - - - - - - - - 26 6 12 7 - - S556 GKPGPPGS QGESGRP 3 174 - - - - 53 63 - - - - - - - - 44 10 2 2 - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S134 GQPGSPGS PGPPGIC - - - - - - - - - - - S143 GPPGICES CPTGPQN - - - - - - - - - - - T146 GICESCPT GPQNYSP - - - - - - - - - - - T278 RNGEKGET GAPGLKG -1.5e-5 - - -1.5e-5 - - - - - - - T340 GPPGPPGT AGFPGSP -1.1e-9 - 0.19 -1.7e-21 - -0.17 - - -5.3e-7 0.34 - S346 GTAGFPGS PGAKGEV - - - - - - - - - - - S391 GPPGINGS PGGKGEM - - - - - - - - - - - S469 GEDGKDGS PGEPGAN -0.016 - - -0.016 - - - - - - - S547 GSPGGPGS DGKPGPP -2.9e-7 - - -2.9e-7 - - - - - - - S556 GKPGPPGS QGESGRP -2.5e-11 - - -1.2e-12 - - - - -0.019 - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S134
S143
T146
T278
T340
S346
S391
S469
S547
S556
S560
T623
T646
T721
S736
T764
S796
T803
S848
S886
S916
S934
S1027
S1039
S1120
S1132
S1177
S1319
S1320
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation CCRCC S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation COAD S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation GBM S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation HNSCC S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation LSCC S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation LUAD S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation OV S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation PDAC S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation UCEC S134 S143 T146 T278 T340 S346 S391 S469 S547 S556 S560 T623 T646 T721 S736 T764 S796 T803 S848 S886 S916 S934 S1027 S1039 S1120 S1132 S1177 S1319 S1320 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S134
S143
T146
T278
T340
S346
S391
S469
S547
S556
S560
T623
T646
T721
S736
T764
S796
T803
S848
S886
S916
S934
S1027
S1039
S1120
S1132
S1177
S1319
S1320
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S134
S143
T146
T278
T340
S346
S391
S469
S547
S556
S560
T623
T646
T721
S736
T764
S796
T803
S848
S886
S916
S934
S1027
S1039
S1120
S1132
S1177
S1319
S1320
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.