APOBEC3F: apolipoprotein B mRNA editing enzyme catalytic subunit 3F
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
3wus chain A
3wus chain B
4iou chain A
4iou chain B
4iou chain C
4iou chain D
4j4j chain A
4j4j chain B
5hx4 chain A
5hx4 chain B
5hx5 chain A
5hx5 chain B
5w2m chain A
5w2m chain B
5w2m chain C
5w2m chain D
5w2m chain J
5w2m chain K
5w2m chain L
5w2m chain M
5zva chain A
5zva chain B
5zvb chain A
5zvb chain B
6nil chain A
6nil chain D
6nil chain G
6nil chain J
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S229 MEVVKHHS PVSWKRG 4 134 - - - - - - 9 - 10 6 53 47 - - - - - - - 9
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S229 MEVVKHHS PVSWKRG 4e-7 - - - - - 4e-7 - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S229
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S229 protein RNA SCNV methylation CCRCC S229 protein RNA SCNV methylation COAD S229 protein RNA SCNV methylation GBM S229 protein RNA SCNV methylation HNSCC S229 protein RNA SCNV methylation LSCC S229 protein RNA SCNV methylation LUAD S229 protein RNA SCNV methylation OV S229 protein RNA SCNV methylation PDAC S229 protein RNA SCNV methylation UCEC S229 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S229
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S229
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.