PABPC1: poly(A) binding protein cytoplasmic 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1cvj chain A
1cvj chain B
1cvj chain C
1cvj chain D
1cvj chain E
1cvj chain F
1cvj chain G
1cvj chain H
1g9l chain A
1jgn chain A
1jh4 chain A
2d9p chain A
2k8g chain A
2rqg chain B
2rqh chain B
2x04 chain A
2x04 chain B
3ktp chain A
3ktr chain A
3kui chain A
3kuj chain A
3kur chain A
3kur chain B
3kur chain C
3kur chain D
3kur chain E
3kur chain F
3kur chain G
3kur chain H
3kus chain A
3kus chain B
3kut chain A
3kut chain B
3pkn chain A
3pth chain A
4f02 chain A
4f02 chain D
4f25 chain A
4f26 chain A
5dx1 chain F
5dx1 chain G
5dx1 chain H
5dx1 chain I
5dx8 chain E
5dx8 chain F
5dx8 chain G
5dx8 chain H
5dxa chain F
5dxa chain G
5dxa chain I
5lgp chain E
5lgp chain F
5lgp chain G
5lgp chain H
5lgq chain E
5lgq chain F
5lgq chain G
5lgq chain H
5lgr chain E
5lgr chain F
5lgr chain G
5lgr chain H
5lgs chain E
5lgs chain F
5lgs chain G
5lgs chain H
7bn3 chain A
7bn3 chain B
7bn3 chain C
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
Loading, please wait
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S315 ERLRKEFS PFGTITS 9 728 55 - 20 20 - - 63 - 78 48 64 58 84 77 18 5 33 16 71 18 S322 SPFGTITS AKVMMEG 1 13 - - - - - - - - - - - - - - - - - - 11 2 S434 QIAQLRPS PRWTAQG 2 17 9 - - - - - - - - - - - - - 6 2 - - - - T531 LNAQPQVT MQQPAVH 1 8 - - 4 4 - - - - - - - - - - - - - - - - T546 VQGQEPLT ASMLASA 3 30 - - 4 4 - - - - - - - - - - - - 10 5 5 2
Tumor and normal comparison
Loading, please wait
Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S315 ERLRKEFS PFGTITS 1.1e-25 - -0.58 - - 0.089 7.3e-18 1.7e-16 - 0.025 6e-8 S322 SPFGTITS AKVMMEG - - - - - - - - - - - S434 QIAQLRPS PRWTAQG - - - - - - - - - - - T531 LNAQPQVT MQQPAVH - - - - - - - - - - - T546 VQGQEPLT ASMLASA - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
Loading, please wait
all sites
S315
S322
S434
T531
T546
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S315 S322 S434 T531 T546 protein RNA SCNV methylation CCRCC S315 S322 S434 T531 T546 protein RNA SCNV methylation COAD S315 S322 S434 T531 T546 protein RNA SCNV methylation GBM S315 S322 S434 T531 T546 protein RNA SCNV methylation HNSCC S315 S322 S434 T531 T546 protein RNA SCNV methylation LSCC S315 S322 S434 T531 T546 protein RNA SCNV methylation LUAD S315 S322 S434 T531 T546 protein RNA SCNV methylation OV S315 S322 S434 T531 T546 protein RNA SCNV methylation PDAC S315 S322 S434 T531 T546 protein RNA SCNV methylation UCEC S315 S322 S434 T531 T546 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S315
S322
S434
T531
T546
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S315
S322
S434
T531
T546
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.