Protein: ENSP00000313603
Gene: ABCF1

LinkedOmicsKB © 2022-2023 Zhang Lab

ABCF1:
ATP binding cassette subfamily F member 1

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S20EWIGDGESTSPSDKV57818-1312117------44----72
T21WIGDGESTSPSDKVV711916---45--137541512--94232
S22IGDGESTSPSDKVVK8556--44747899---151454621452248918
S105MERLKKLSVPTSDEE101122113-10380908999-10862551101011425120637
T108LKKLSVPTSDEEDEV944026-131297100--52151498133739518
S109KKLSVPTSDEEDEVP101553122-103809710099-10862108991101018319105449518
S140AALIQDQSEEEEEEE101389113-10380605299-1086210899110101248105449518
S166NRINKAVSEEQQPAL101376122-8160889199-975693879889761794407018
S228AKKAEQGSEEEGEGE101553122-103809710099-10862108991101018319105449518
S244EEEEGGESKADDPYA73628-44--36---98894035--82299
Showing 1 to 10 of 15 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S20EWIGDGESTSPSDKV-----------
T21WIGDGESTSPSDKVV-----------
S22IGDGESTSPSDKVVK0.063--1.1e-11-----0.02-6.2e-61.6e-4
S105MERLKKLSVPTSDEE3.7e-9-7.4e-78.3e-14-0.39-0.38--0.34-
T108LKKLSVPTSDEEDEV-0.051--0.072-------5.3e-6
S109KKLSVPTSDEEDEVP2.3e-20--1.2e-133.8e-13-5.7e-134.6e-311.5e-200.011-6.7e-4-0.36
S140AALIQDQSEEEEEEE0.31-0.054-3.6e-4--3.5e-52.2e-187.8e-16--9.7e-10-0.085
S166NRINKAVSEEQQPAL-1.1e-15-8.7e-17-6.1e-17--1.4e-3-6.6e-18-0.12-1.9e-60.14-4.1e-9
S228AKKAEQGSEEEGEGE6.3e-14--8e-102.2e-7-2.9e-33.5e-267.2e-300.019-1.5e-148.7e-3
S244EEEEGGESKADDPYA3.5e-32-----7.9e-251.4e-10---
Showing 1 to 10 of 15 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationCCRCCS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationCOADS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationGBMS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationHNSCCS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationLSCCS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationLUADS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationOVS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationPDACS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylationUCECS20T21S22S105T108S109S140S166S228S244S254S287T422S595S621proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.