CSNK1D: casein kinase 1 delta
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
3uys chain A
3uys chain B
3uys chain C
3uys chain D
3uyt chain A
3uyt chain B
3uyt chain C
3uyt chain D
3uzp chain A
3uzp chain B
4hgt chain A
4hgt chain B
4hnf chain A
4hnf chain B
4kb8 chain A
4kb8 chain B
4kb8 chain C
4kb8 chain D
4kba chain A
4kba chain B
4kba chain C
4kba chain D
4kbc chain A
4kbc chain B
4kbk chain A
4kbk chain B
4kbk chain C
4kbk chain D
4tn6 chain A
4tn6 chain B
4tw9 chain A
4tw9 chain B
4twc chain A
4twc chain B
5ih4 chain A
5ih5 chain A
5ih6 chain A
5mqv chain A
5mqv chain B
5mqv chain C
5mqv chain D
5mqv chain E
5mqv chain F
5okt chain A
5okt chain B
5okt chain C
5okt chain D
5w4w chain A
5w4w chain B
5w4w chain C
5w4w chain D
6f1w chain A
6f1w chain B
6f26 chain A
6f26 chain B
6gzm chain A
6gzm chain B
6hmp chain A
6hmp chain B
6hmr chain A
6hmr chain B
6pxn chain A
6pxn chain B
6pxo chain A
6pxo chain B
6pxp chain A
6pxp chain B
6rcg chain A
6rch chain A
6rch chain B
6ru6 chain A
6ru6 chain B
6ru7 chain A
6ru7 chain B
6ru8 chain A
6ru8 chain B
6ru8 chain C
6ru8 chain D
7p7f chain A
7p7f chain B
7p7f chain C
7p7f chain D
7p7g chain A
7p7g chain B
7p7h chain A
7p7h chain B
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S318 REERLRHS RNPATRG 1 23 - - - - - - 23 - - - - - - - - - - - - - S328 PATRGLPS TASGRLR 6 190 14 - - - - - - - 11 7 40 36 21 20 20 5 - - 7 9 T329 ATRGLPST ASGRLRG 1 9 - - - - - - 9 - - - - - - - - - - - - - S331 RGLPSTAS GRLRGTQ 9 1159 122 - 103 80 - - 27 - 108 62 108 99 92 84 27 6 105 44 76 16 T337 ASGRLRGT QEVAPPT 2 66 - - 17 13 - - - - - - - - 20 16 - - - - - - T344 TQEVAPPT PLTPTSH 8 484 89 - 36 34 - - - - 39 24 38 32 78 73 11 5 12 5 8 - T347 VAPPTPLT PTSHTAN 9 830 90 - 32 23 - - 90 - 27 15 73 62 87 81 83 19 29 14 87 18 T349 PPTPLTPT SHTANTS 6 156 - - 12 4 - - 41 - - - 5 4 - - 33 4 10 4 27 12 S350 PTPLTPTS HTANTSP 3 57 - - - - - - 9 - - - - - - - 17 3 - - 24 4 T352 PLTPTSHT ANTSPRP 5 68 - - - - - - 8 - 7 2 - - - - 19 5 7 4 14 2
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S318 REERLRHS RNPATRG - - - - - - - - - - - S328 PATRGLPS TASGRLR 0.086 - - - - - 0.073 0.53 - - - T329 ATRGLPST ASGRLRG - - - - - - - - - - - S331 RGLPSTAS GRLRGTQ 2e-18 - 8.0e-4 - - 1.7e-6 1.3e-10 9e-7 - 0.37 0.29 T337 ASGRLRGT QEVAPPT 2.9e-4 - - - - - - 2.9e-4 - - - T344 TQEVAPPT PLTPTSH -0.6 - 0.11 - - -3.3e-3 0.22 0.24 - - - T347 VAPPTPLT PTSHTAN 0.39 - 0.78 - - -0.045 0.99 0.022 0.23 -0.45 0.21 T349 PPTPLTPT SHTANTS 0.11 - - - - - - - - - 0.11 S350 PTPLTPTS HTANTSP - - - - - - - - - - - T352 PLTPTSHT ANTSPRP - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S318
S328
T329
S331
T337
T344
T347
T349
S350
T352
T355
S356
S361
S382
S383
S384
S396
S406
S407
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation CCRCC S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation COAD S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation GBM S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation HNSCC S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation LSCC S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation LUAD S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation OV S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation PDAC S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation UCEC S318 S328 T329 S331 T337 T344 T347 T349 S350 T352 T355 S356 S361 S382 S383 S384 S396 S406 S407 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S318
S328
T329
S331
T337
T344
T347
T349
S350
T352
T355
S356
S361
S382
S383
S384
S396
S406
S407
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S318
S328
T329
S331
T337
T344
T347
T349
S350
T352
T355
S356
S361
S382
S383
S384
S396
S406
S407
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.