KDM3B: lysine demethylase 3B
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
4c8d chain A
5r7x chain A
5r7x chain B
5raa chain A
5raa chain B
5rab chain A
5rab chain B
5rac chain A
5rac chain B
5rad chain A
5rad chain B
5rae chain A
5rae chain B
5raf chain A
5raf chain B
5rag chain A
5rag chain B
5rah chain A
5rah chain B
5rai chain A
5rai chain B
5raj chain A
5raj chain B
5rak chain A
5rak chain B
5ral chain A
5ral chain B
5ram chain A
5ram chain B
5ran chain A
5ran chain B
5rao chain A
5rao chain B
5rap chain A
5rap chain B
5raq chain A
5raq chain B
5rar chain A
5rar chain B
5ras chain A
5ras chain B
5rau chain A
5rau chain B
5rav chain A
5rav chain B
5raw chain A
5raw chain B
5rax chain A
5rax chain B
5ray chain A
5ray chain B
5raz chain A
5raz chain B
5rb0 chain A
5rb0 chain B
5rb1 chain A
5rb1 chain B
5rb2 chain A
5rb2 chain B
5rb3 chain A
5rb3 chain B
5rb4 chain A
5rb4 chain B
5rb5 chain A
5rb5 chain B
5rb6 chain A
5rb6 chain B
5rb7 chain A
5rb7 chain B
6rbj chain A
6rbj chain B
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S255 HVMLMDNS APQSEGG 1 9 - - - - - - - - - - - - - - - - 6 3 - - T263 APQSEGGT LKAVKSS 1 9 - - - - - - - - - - - - - - - - 6 3 - - S278 KGKKKRES IEGKDGR 10 1290 45 - 86 66 84 86 99 - 76 41 98 91 110 101 61 14 84 35 95 18 S289 KDGRRRKS ASDSGCD 10 1020 36 - 4 4 97 100 99 - 49 32 94 85 34 33 83 19 98 40 95 18 S291 GRRRKSAS DSGCDPA 6 102 42 - 21 4 - - 9 - - - - - 5 4 - - 6 3 8 - S293 RRKSASDS GCDPASK 1 9 - - - - - - - - - - - - 5 4 - - - - - - S311 GDRGEVDS NGSDGGE 10 365 70 - 8 7 4 5 35 - 11 7 49 45 26 24 18 6 4 2 31 13 S314 GEVDSNGS DGGEASR 10 1256 113 - 94 72 54 53 99 - 59 32 108 99 102 93 73 12 80 30 65 18 S320 GSDGGEAS RGPWKGG 9 333 47 - 5 4 24 29 18 - - - 35 33 14 12 40 11 30 13 18 - T383 GDTPASFT PYSTATG 1 29 - - - - - - - - - - - - - - - - - - 26 3
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S255 HVMLMDNS APQSEGG - - - - - - - - - - - T263 APQSEGGT LKAVKSS - - - - - - - - - - - S278 KGKKKRES IEGKDGR 0.16 - 0.041 5.7e-3 - -2.5e-4 -0.056 6.4e-13 0.38 -3.3e-3 -0.67 S289 KDGRRRKS ASDSGCD 4.5e-7 - - 1.1e-7 - -0.055 0.25 1.4e-8 0.08 1.9e-3 -0.088 S291 GRRRKSAS DSGCDPA - - - - - - - - - - - S293 RRKSASDS GCDPASK - - - - - - - - - - - S311 GDRGEVDS NGSDGGE 4.8e-7 - - - - - 2.2e-4 1.1e-5 - - 0.52 S314 GEVDSNGS DGGEASR 1.4e-17 - -2.7e-7 6.9e-6 - 0.016 1.1e-13 2.6e-15 -0.7 1.2e-4 3.5e-4 S320 GSDGGEAS RGPWKGG -0.35 - - -3.1e-3 - - 1 - 0.26 0.82 - T383 GDTPASFT PYSTATG - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S255
T263
S278
S289
S291
S293
S311
S314
S320
T383
T389
S465
S480
S490
S492
S506
S511
T536
S546
S553
S560
S573
S608
T614
S725
S727
T729
T733
T740
S742
S743
S744
T746
T751
S766
S773
S778
S779
S798
S816
S819
S822
S1155
T1171
T1172
S1183
S1201
S1251
S1253
T1263
S1267
T1270
S1276
T1307
T1311
S1331
T1360
T1362
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation CCRCC S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation COAD S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation GBM S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation HNSCC S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation LSCC S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation LUAD S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation OV S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation PDAC S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation UCEC S255 T263 S278 S289 S291 S293 S311 S314 S320 T383 T389 S465 S480 S490 S492 S506 S511 T536 S546 S553 S560 S573 S608 T614 S725 S727 T729 T733 T740 S742 S743 S744 T746 T751 S766 S773 S778 S779 S798 S816 S819 S822 S1155 T1171 T1172 S1183 S1201 S1251 S1253 T1263 S1267 T1270 S1276 T1307 T1311 S1331 T1360 T1362 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S255
T263
S278
S289
S291
S293
S311
S314
S320
T383
T389
S465
S480
S490
S492
S506
S511
T536
S546
S553
S560
S573
S608
T614
S725
S727
T729
T733
T740
S742
S743
S744
T746
T751
S766
S773
S778
S779
S798
S816
S819
S822
S1155
T1171
T1172
S1183
S1201
S1251
S1253
T1263
S1267
T1270
S1276
T1307
T1311
S1331
T1360
T1362
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S255
T263
S278
S289
S291
S293
S311
S314
S320
T383
T389
S465
S480
S490
S492
S506
S511
T536
S546
S553
S560
S573
S608
T614
S725
S727
T729
T733
T740
S742
S743
S744
T746
T751
S766
S773
S778
S779
S798
S816
S819
S822
S1155
T1171
T1172
S1183
S1201
S1251
S1253
T1263
S1267
T1270
S1276
T1307
T1311
S1331
T1360
T1362
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.