Protein: ENSP00000340766
Gene: SMG7

LinkedOmicsKB © 2022-2023 Zhang Lab

SMG7:
SMG7 nonsense mediated mRNA decay factor

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T509ENLILQETSVIESLA110--------73----------
S510NLILQETSVIESLAA444--8-----11755------8-
S514QETSVIESLAADGSP44115-54------5444------
S520ESLAADGSPGLKSVL6149----7254-2916--121253---9
S534LSTSRNLSNNCDTGE391--54--------2724----292
S617NVAVQVKSQTELRKT4101------9---542321----354
T619AVQVKSQTELRKTPV236----99--------144----
T624SQTELRKTPVSEARK143--------------3310----
S781AVPALGKSPPHHSGF1051449-444590-90522522413971127539
S786GKSPPHHSGFQQYQQ3268---63----54--------
Showing 1 to 10 of 13 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T509ENLILQETSVIESLA-----------
S510NLILQETSVIESLAA-----------
S514QETSVIESLAADGSP-----------
S520ESLAADGSPGLKSVL-0.26-----0.26-----
S534LSTSRNLSNNCDTGE2.9e-5------2.9e-5---
S617NVAVQVKSQTELRKT5.1e-4------5.1e-4---
T619AVQVKSQTELRKTPV-----------
T624SQTELRKTPVSEARK0.055-------0.055--
S781AVPALGKSPPHHSGF9.5e-16----1.2e-58.3e-46.2e-10---
S786GKSPPHHSGFQQYQQ-----------
Showing 1 to 10 of 13 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationCCRCCT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationCOADT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationGBMT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationHNSCCT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationLSCCT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationLUADT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationOVT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationPDACT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylationUCECT509S510S514S520S534S617T619T624S781S786Y791S897S930proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.