SNRPD2: small nuclear ribonucleoprotein D2 polypeptide
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1b34 chain B
3cw1 chain C
3cw1 chain P
3cw1 chain Q
3cw1 chain R
3jcr chain Q
3jcr chain q
3pgw chain V
3pgw chain Y
4pjo chain D
4pjo chain R
4pjo chain d
4pjo chain r
4v98 chain AB
4v98 chain AJ
4v98 chain AR
4v98 chain AZ
4v98 chain Ah
4v98 chain Ap
4v98 chain Ax
4v98 chain BB
4v98 chain BJ
4v98 chain BR
4v98 chain BZ
4v98 chain Bh
4v98 chain Bp
4v98 chain Bx
4v98 chain CB
4v98 chain CJ
4v98 chain CR
4v98 chain CZ
4v98 chain Ch
4v98 chain Cp
4wzj chain D
4wzj chain DD
4wzj chain DDD
4wzj chain DDDD
4wzj chain K
4wzj chain KK
4wzj chain KKK
4wzj chain KKKK
4wzj chain R
4wzj chain RR
4wzj chain RRR
4wzj chain RRRR
5mqf chain a
5mqf chain h
5o9z chain S
5o9z chain a
5o9z chain h
5xjc chain d
5xjc chain k
5xjl chain B
5xjq chain B
5xjr chain B
5xjs chain B
5xjt chain B
5xju chain B
5yzg chain d
5yzg chain k
5z56 chain d
5z56 chain k
5z57 chain d
5z57 chain k
5z58 chain d
5z58 chain k
6ah0 chain P
6ah0 chain a
6ah0 chain k
6ahd chain P
6ahd chain c
6ahd chain k
6ff7 chain a
6ff7 chain h
6icz chain d
6icz chain k
6id0 chain d
6id0 chain k
6id1 chain d
6id1 chain k
6qdv chain j
6qdv chain m
6qw6 chain 42
6qw6 chain 52
6qx9 chain 12
6qx9 chain 22
6qx9 chain 42
6qx9 chain 52
6y53 chain h
6y5q chain h
7a5p chain d
7a5p chain h
7abg chain a
7abg chain h
7abi chain a
7abi chain h
7b0y chain e
7dvq chain d
7dvq chain k
7evo chain a
7w59 chain d
7w59 chain k
7w5a chain d
7w5a chain k
7w5b chain d
7w5b chain k
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
Loading, please wait
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S2 ______MS LLNKPKS 1 16 - - 8 8 - - - - - - - - - - - - - - - - T12 NKPKSEMT PEELQKR 10 1368 104 - 87 64 46 44 99 - 108 62 103 95 106 97 83 19 97 41 95 18 T26 REEEEFNT GPLSVLT 2 52 42 - - - - - - - - - 5 5 - - - - - - - -
Tumor and normal comparison
Loading, please wait
Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S2 ______MS LLNKPKS - - - - - - - - - - - T12 NKPKSEMT PEELQKR 6.8e-24 - -6.3e-3 0.052 - 8.6e-20 2.5e-27 1.5e-21 0.2 -1.9e-5 4.7e-3 T26 REEEEFNT GPLSVLT - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
Loading, please wait
all sites
S2
T12
T26
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S2 T12 T26 protein RNA SCNV methylation CCRCC S2 T12 T26 protein RNA SCNV methylation COAD S2 T12 T26 protein RNA SCNV methylation GBM S2 T12 T26 protein RNA SCNV methylation HNSCC S2 T12 T26 protein RNA SCNV methylation LSCC S2 T12 T26 protein RNA SCNV methylation LUAD S2 T12 T26 protein RNA SCNV methylation OV S2 T12 T26 protein RNA SCNV methylation PDAC S2 T12 T26 protein RNA SCNV methylation UCEC S2 T12 T26 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S2
T12
T26
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S2
T12
T26
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.