Protein: ENSP00000343526
Gene: USP1

LinkedOmicsKB © 2022-2023 Zhang Lab

USP1:
ubiquitin specific peptidase 1

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S13PSESNGLSRGSPSKK17--------52----------
S16SNGLSRGSPSKKNRL730152-----46-2915343143--1794516
S42RALDFTDSQENEEKA19----------54--------
S66QVVPAAQSSPINCEK735080-351954--522629263127124----
S67VVPAAQSSPINCEKR104589-87616472-21151010442953314839
S292KLSKEHQSLEENQRQ72384---3681---2521446014--511
S313ATSDTLESPPKIIPK1054196-121211763-432745405449111258415
S327KYISENESPRPSQKK9746113---171036-9756595560527015177757
S398TNGCGLESPGNTVTP6124--88----27155598--511716
S471ELSKVEESSEISPEP12222-------------------
Showing 1 to 10 of 14 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S13PSESNGLSRGSPSKK-----------
S16SNGLSRGSPSKKNRL8.4e-16----1.1e-61.2e-15---0.29
S42RALDFTDSQENEEKA-----------
S66QVVPAAQSSPINCEK5.6e-5--0.47--0.990.0211.1e-10---
S67VVPAAQSSPINCEKR0.21--2.4e-6--0.23----0.18-
S292KLSKEHQSLEENQRQ0.012-----5.1e-3-0.45--
S313ATSDTLESPPKIIPK3.4e-10----8.6e-42.1e-12-0.47-0.14
S327KYISENESPRPSQKK1.7e-46----1.6e-124.5e-204.8e-155.1e-6--
S398TNGCGLESPGNTVTP-2.1e-3-----2.1e-3-----
S471ELSKVEESSEISPEP-----------
Showing 1 to 10 of 14 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationCCRCCS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationCOADS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationGBMS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationHNSCCS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationLSCCS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationLUADS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationOVS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationPDACS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylationUCECS13S16S42S66S67S292S313S327S398S471S475S768T774S775proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.