FDPS: farnesyl diphosphate synthase
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1yq7 chain A
1yv5 chain A
1zw5 chain A
2f7m chain F
2f89 chain F
2f8c chain F
2f8z chain F
2f92 chain F
2f94 chain F
2f9k chain F
2opm chain A
2opn chain A
2qis chain A
2rah chain A
2vf6 chain A
3b7l chain A
3cp6 chain A
3n1v chain F
3n1w chain F
3n3l chain F
3n45 chain F
3n46 chain F
3n49 chain F
3n5h chain F
3n5j chain F
3n6k chain F
3rye chain A
3s4j chain A
4dem chain F
4ga3 chain A
4h5c chain F
4h5d chain F
4h5e chain F
4jvj chain F
4kfa chain A
4kpd chain A
4kpj chain A
4kq5 chain A
4kqs chain A
4kqu chain A
4l2x chain F
4lfv chain F
4lpg chain F
4lph chain F
4n1z chain F
4n9u chain A
4nfi chain F
4nfj chain F
4nfk chain F
4ng6 chain A
4nke chain A
4nkf chain A
4nua chain A
4ogu chain A
4p0v chain A
4p0w chain A
4p0x chain A
4pvx chain F
4pvy chain F
4q23 chain A
4qpf chain A
4qxs chain F
4rxa chain A
4xqr chain F
4xqs chain F
4xqt chain F
5cg5 chain A
5cg6 chain A
5dgm chain F
5dgn chain F
5dgs chain F
5diq chain F
5djp chain F
5djr chain F
5djv chain F
5ja0 chain F
5juz chain F
5jv0 chain F
5jv1 chain F
5jv2 chain F
5ksx chain F
5ygi chain A
6n7y chain F
6n7z chain F
6n82 chain F
6n83 chain F
6oag chain F
6oah chain F
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S9 PLSRWLRS VGVFLLP 2 20 - - - - - - - - - - - - - - 12 2 - - 6 - Y19 VFLLPAPY WAPRERW 2 20 - - - - - - - - - - - - - - 12 2 - - 6 - T345 VQCLQRAT PEQYQIL 1 9 - - - - - - 9 - - - - - - - - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S9 PLSRWLRS VGVFLLP - - - - - - - - - - - Y19 VFLLPAPY WAPRERW - - - - - - - - - - - T345 VQCLQRAT PEQYQIL - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S9
Y19
T345
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S9 Y19 T345 protein RNA SCNV methylation CCRCC S9 Y19 T345 protein RNA SCNV methylation COAD S9 Y19 T345 protein RNA SCNV methylation GBM S9 Y19 T345 protein RNA SCNV methylation HNSCC S9 Y19 T345 protein RNA SCNV methylation LSCC S9 Y19 T345 protein RNA SCNV methylation LUAD S9 Y19 T345 protein RNA SCNV methylation OV S9 Y19 T345 protein RNA SCNV methylation PDAC S9 Y19 T345 protein RNA SCNV methylation UCEC S9 Y19 T345 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S9
Y19
T345
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S9
Y19
T345
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.