Protein: ENSP00000349783
Gene: RC3H2

LinkedOmicsKB © 2022-2023 Zhang Lab

RC3H2:
ring finger and CCCH-type domains 2

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T402YSRKGHETPQPQPNS267----------54------535
S549VTENKIGSPPKTPVS822315---4545---55541941157818
T553KIGSPPKTPVSNVAA69813-----45---5454--1156-
S580NSVPQKSSPFLTRVP449------9-63--1312----6-
S714QRDDIIRSNSLPPMD118------18-------------
S716DDIIRSNSLPPMDVM127--------------225----
S738SLRERYNSLDGYYSV722932-----54-10610101412293--436
S795QKAPLVSSTLPVATQ19----36--------------
T801SSTLPVATQSPTPPS2236-----------------134
S803TLPVATQSPTPPSPL92566-445426-23152929353383--1913
Showing 1 to 10 of 18 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T402YSRKGHETPQPQPNS-----------
S549VTENKIGSPPKTPVS-0.22----------0.22
T553KIGSPPKTPVSNVAA-----------
S580NSVPQKSSPFLTRVP-----------
S714QRDDIIRSNSLPPMD-----------
S716DDIIRSNSLPPMDVM-----------
S738SLRERYNSLDGYYSV-----------
S795QKAPLVSSTLPVATQ-----------
T801SSTLPVATQSPTPPS-----------
S803TLPVATQSPTPPSPL-7.5e-3-----0.46-0.73-3.8e-4---
Showing 1 to 10 of 18 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationCCRCCT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationCOADT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationGBMT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationHNSCCT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationLSCCT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationLUADT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationOVT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationPDACT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylationUCECT402S549T553S580S714S716S738S795T801S803T805S808S982S983T984S999S1017S1119proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.